Gene annotation
Transcriptome id Sobic.009G164000.2,Sobic.009G164000.1,Sobic.009G164000.3
Synonym SbNF-YB14, SYCOARATH, Nuclear Factor Y, Sb09g022590
Functional annotation tentative name (PubMedID : 31536532)
cysteinyl-tRNA synthetase, putative, expressed
UniProt A0A1B6P960 , A0A1Z5R312
Pfam PF01406
Panther DB PTHR10890 PTHR10890:SF12
NCBI CDD KOG2007; Cysteinyl-tRNA synthetase
KEGG Orthology K01883; CARS, cysteinyl-tRNA synthetase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G31170 : Cysteinyl-tRNA synthetase, class Ia family protein
RAP-DB (Rice) LOC_Os03g04960.2,LOC_Os03g04960.1 : cysteinyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a037699 , Zm00025a028111 , Zm00025a043902
Brachypodium KQK23703 , KQK23705 , KQK23704 , KQK23706 , KQJ96980
Barley HORVU4Hr1G078750.4 , HORVU4Hr1G078750.1 , HORVU4Hr1G078750.3 , HORVU4Hr1G078750.2
Wheat TraesCS1D02G144100 , TraesCS1D02G144100 , TraesCS1A02G145100 , TraesCS4A02G408000 , TraesCS4B02G307500 , TraesCS4D02G305700
Populus -


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cDNA sequences
Sobic.009G164000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G176400 ATP binding protein, putative, expressed K06883: uncharacterized protein
2 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
3 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
4 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
5 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
6 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
7 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
8 Sobic.002G300700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
9 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
10 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
11 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
12 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
13 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
14 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
15 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
17 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
18 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
19 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
20 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31


Gene co-expression network
sample Sobic009G164000 Sobic009G164000 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic009G164000--Sobic003G422900 Sobic002G371700 Sobic002G371700 Sobic009G164000--Sobic002G371700 Sobic001G114500 Sobic001G114500 Sobic009G164000--Sobic001G114500 Sobic003G132000 Sobic003G132000 Sobic009G164000--Sobic003G132000 Sobic008G103300 Sobic008G103300 Sobic009G164000--Sobic008G103300 Sobic004G353000 Sobic004G353000 Sobic009G164000--Sobic004G353000 Sobic002G300700 Sobic002G300700 Sobic009G164000--Sobic002G300700 Sobic001G249700 Sobic001G249700 Sobic009G164000--Sobic001G249700 Sobic004G176400--Sobic009G164000 Sobic006G101700 Sobic006G101700 Sobic004G176400--Sobic006G101700 Sobic004G156800 Sobic004G156800 Sobic004G176400--Sobic004G156800 Sobic004G176400--Sobic004G353000 Sobic008G092300 Sobic008G092300 Sobic004G176400--Sobic008G092300 Sobic007G184500 Sobic007G184500 Sobic004G176400--Sobic007G184500 Sobic009G143800 Sobic009G143800 Sobic004G176400--Sobic009G143800 Sobic001G360200 Sobic001G360200 Sobic004G176400--Sobic001G360200 Sobic006G278700 Sobic006G278700 Sobic004G176400--Sobic006G278700 Sobic010G020400 Sobic010G020400 Sobic003G422900--Sobic010G020400 Sobic003G155900 Sobic003G155900 Sobic003G422900--Sobic003G155900 Sobic002G303600 Sobic002G303600 Sobic003G422900--Sobic002G303600 Sobic003G422900--Sobic009G164000 Sobic009G044800 Sobic009G044800 Sobic003G422900--Sobic009G044800 Sobic001G392300 Sobic001G392300 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic002G256200 Sobic002G256200 Sobic003G422900--Sobic002G256200 Sobic008G082500 Sobic008G082500 Sobic003G422900--Sobic008G082500 Sobic002G371700--Sobic008G103300 Sobic004G053500 Sobic004G053500 Sobic002G371700--Sobic004G053500 Sobic010G059500 Sobic010G059500 Sobic002G371700--Sobic010G059500 Sobic002G142900 Sobic002G142900 Sobic002G371700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic001G087600 Sobic001G087600 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic001G114500--Sobic008G103300 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic001G114500--Sobic004G156800 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic003G132000--Sobic008G103300 Sobic001G487100 Sobic001G487100 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic003G132000--Sobic009G164000 Sobic003G132000--Sobic002G371700 Sobic003G132000--Sobic003G363700 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic008G103300--Sobic002G371700 Sobic008G103300--Sobic003G046300 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic004G353000--Sobic006G200700 Sobic004G353000--Sobic009G143800 Sobic010G116600 Sobic010G116600 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic004G353000--Sobic002G371700 Sobic004G353000--Sobic009G044800 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800 Sobic002G300700--Sobic001G360200 Sobic006G252700 Sobic006G252700 Sobic002G300700--Sobic006G252700 Sobic003G005200 Sobic003G005200 Sobic002G300700--Sobic003G005200 Sobic002G300700--Sobic003G422900 Sobic002G300700--Sobic009G164000 Sobic004G066200 Sobic004G066200 Sobic002G300700--Sobic004G066200 Sobic002G300700--Sobic006G278700 Sobic004G039600 Sobic004G039600 Sobic002G300700--Sobic004G039600 Sobic003G352200 Sobic003G352200 Sobic002G300700--Sobic003G352200 Sobic009G033900 Sobic009G033900 Sobic001G249700--Sobic009G033900 Sobic010G247400 Sobic010G247400 Sobic001G249700--Sobic010G247400 Sobic001G249700--Sobic009G164000 Sobic001G249700--Sobic004G156800 Sobic001G249700--Sobic002G256200 Sobic001G259000 Sobic001G259000 Sobic001G249700--Sobic001G259000 Sobic001G249700--Sobic006G270600 Sobic001G168900 Sobic001G168900 Sobic001G249700--Sobic001G168900 Sobic004G356900 Sobic004G356900 Sobic001G249700--Sobic004G356900
Octagon: transcription factors


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