Gene annotation
Transcriptome id Sobic.003G132000.1
Synonym Sb03g011260, CSN2, COP12, FUS12, ATCSN2
Functional annotation proteasome subunit, putative, expressed
UniProt C5XHA8
Pfam PF01399
Panther DB PTHR10678
NCBI CDD -
KEGG Orthology K12176; COPS2, CSN2, COP9 signalosome complex subunit 2
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G26990 : proteasome family protein
RAP-DB (Rice) LOC_Os01g17180.1 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a035201 , Zm00025a024142
Brachypodium KQK03945 , KQK03944 , KQK03946
Barley HORVU3Hr1G039980.12 , HORVU3Hr1G039980.13 , HORVU3Hr1G039980.10 , HORVU3Hr1G039980.11 , HORVU3Hr1G039980.8 , HORVU3Hr1G039980.9 , HORVU3Hr1G039980.2 , HORVU3Hr1G039980.3 , HORVU3Hr1G039980.4 , HORVU3Hr1G039980.5 , HORVU3Hr1G039980.6 , HORVU3Hr1G039980.7
Wheat TraesCS3A02G191800 , TraesCS3B02G219800 , TraesCS3D02G194400
Populus PNT19114 , PNT56019 , PNT56022 , PNT56021 , PNT56020


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cDNA sequences
Sobic.003G132000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
2 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
3 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
4 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
5 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
6 Sobic.004G192900 expressed protein -
7 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
8 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
9 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
10 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
11 Sobic.004G320100 expressed protein -
12 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
13 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
14 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
15 Sobic.003G128300 NEDD8-activating enzyme E1 catalytic subunit, putative, expressed K10686: UBE1C, ubiquitin-activating enzyme E1 C
16 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
17 Sobic.006G049100 expressed protein -
18 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
19 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
20 Sobic.004G041200 expressed protein -


Gene co-expression network
sample Sobic003G132000 Sobic003G132000 Sobic001G114500 Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic001G487100 Sobic001G487100 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic001G114500--Sobic008G103300 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic006G270600--Sobic003G132000 Sobic001G259000 Sobic001G259000 Sobic006G270600--Sobic001G259000 Sobic010G264000 Sobic010G264000 Sobic006G270600--Sobic010G264000 Sobic002G295500 Sobic002G295500 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic006G270600--Sobic001G114500 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic003G046300--Sobic008G103300 Sobic002G142900 Sobic002G142900 Sobic003G046300--Sobic002G142900 Sobic003G046300--Sobic002G371700 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic003G046300--Sobic001G487100 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic008G103300--Sobic002G371700 Sobic008G103300--Sobic003G046300 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic008G103300--Sobic002G295500 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic001G487100--Sobic003G046300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic004G192900--Sobic003G132000 Sobic004G192900--Sobic009G258400 Sobic004G192900--Sobic001G114500 Sobic004G192900--Sobic006G270600 Sobic004G192900--Sobic003G121300 Sobic004G192900--Sobic010G264000 Sobic010G209000 Sobic010G209000 Sobic004G192900--Sobic010G209000 Sobic004G353000 Sobic004G353000 Sobic004G192900--Sobic004G353000 Sobic004G192900--Sobic001G259000 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic009G164000--Sobic003G422900 Sobic009G164000--Sobic002G371700 Sobic009G164000--Sobic001G114500 Sobic009G164000--Sobic003G132000 Sobic009G164000--Sobic008G103300 Sobic009G164000--Sobic004G353000 Sobic002G300700 Sobic002G300700 Sobic009G164000--Sobic002G300700 Sobic001G249700 Sobic001G249700 Sobic009G164000--Sobic001G249700 Sobic002G371700--Sobic008G103300 Sobic004G053500 Sobic004G053500 Sobic002G371700--Sobic004G053500 Sobic010G059500 Sobic010G059500 Sobic002G371700--Sobic010G059500 Sobic002G371700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic001G087600 Sobic001G087600 Sobic002G371700--Sobic001G087600 Sobic002G371700--Sobic003G363700 Sobic003G379200 Sobic003G379200 Sobic003G363700--Sobic003G379200 Sobic001G237600 Sobic001G237600 Sobic003G363700--Sobic001G237600 Sobic004G265500 Sobic004G265500 Sobic003G363700--Sobic004G265500 Sobic003G363700--Sobic002G371700 Sobic009G228000 Sobic009G228000 Sobic003G363700--Sobic009G228000 Sobic002G374300 Sobic002G374300 Sobic003G363700--Sobic002G374300 Sobic003G043000 Sobic003G043000 Sobic003G363700--Sobic003G043000 Sobic010G000800 Sobic010G000800 Sobic003G363700--Sobic010G000800 Sobic003G182300 Sobic003G182300 Sobic003G363700--Sobic003G182300
Octagon: transcription factors


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