Gene annotation
Transcriptome id Sobic.007G042900.1
Synonym Sb07g003540
Functional annotation BSD domain-containing protein, putative, expressed
UniProt C5YGW1
Pfam PF08567 PF03909
Panther DB PTHR12856
NCBI CDD KOG2074; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB1
KEGG Orthology K03141; TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0006289nucleotide-excision repair GO:0000439transcription factor TFIIH core complex


Orthologs (automatic annotation)
TAIR AT1G55750 : BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
RAP-DB (Rice) LOC_Os08g25060.1 : BSD domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a030109
Brachypodium KQJ95401
Barley HORVU7Hr1G071800.11 , HORVU7Hr1G071800.10 , HORVU7Hr1G071800.13 , HORVU7Hr1G071800.12 , HORVU7Hr1G071800.15 , HORVU7Hr1G071800.14 , HORVU7Hr1G071800.17 , HORVU7Hr1G071800.16 , HORVU7Hr1G071800.19 , HORVU7Hr1G071800.18 , HORVU7Hr1G071800.5 , HORVU7Hr1G071800.4 , HORVU7Hr1G071800.7 , HORVU7Hr1G071800.6 , HORVU7Hr1G071800.1 , HORVU7Hr1G071800.3 , HORVU7Hr1G071800.2 , HORVU7Hr1G071800.9 , HORVU7Hr1G071800.8 , HORVU3Hr1G092530.8 , HORVU3Hr1G092530.9 , HORVU3Hr1G092530.2 , HORVU3Hr1G092530.3 , HORVU3Hr1G092530.1 , HORVU3Hr1G092530.6 , HORVU3Hr1G092530.7 , HORVU3Hr1G092530.4 , HORVU3Hr1G092530.5 , HORVU3Hr1G092530.33 , HORVU3Hr1G092530.18 , HORVU3Hr1G092530.19 , HORVU3Hr1G092530.12 , HORVU3Hr1G092530.13 , HORVU3Hr1G092530.14 , HORVU3Hr1G092530.15 , HORVU3Hr1G092530.16 , HORVU3Hr1G092530.17 , HORVU3Hr1G092530.29 , HORVU3Hr1G092530.28 , HORVU3Hr1G092530.25 , HORVU3Hr1G092530.27 , HORVU3Hr1G092530.26 , HORVU3Hr1G092530.21 , HORVU3Hr1G092530.20 , HORVU3Hr1G092530.23 , HORVU3Hr1G092530.22 , HORVU3Hr1G092530.24 , HORVU3Hr1G092530.32 , HORVU3Hr1G092530.30 , HORVU3Hr1G092530.31 , HORVU3Hr1G092530.10 , HORVU3Hr1G092530.11 , HORVU7Hr1G071800.36 , HORVU7Hr1G071800.35 , HORVU7Hr1G071800.34 , HORVU7Hr1G071800.33 , HORVU7Hr1G071800.32 , HORVU7Hr1G071800.31 , HORVU7Hr1G071800.30 , HORVU7Hr1G071800.28 , HORVU7Hr1G071800.29 , HORVU7Hr1G071800.24 , HORVU7Hr1G071800.25 , HORVU7Hr1G071800.26 , HORVU7Hr1G071800.27 , HORVU7Hr1G071800.20 , HORVU7Hr1G071800.21 , HORVU7Hr1G071800.22 , HORVU7Hr1G071800.23
Wheat TraesCS3D02G412100 , TraesCS3D02G412100 , TraesCS3A02G416500 , TraesCS3A02G416500 , TraesCS3A02G416500 , TraesCS3D02G412100 , TraesCS7D02G298200 , TraesCS7B02G203000 , TraesCS7B02G203000 , TraesCS7B02G203000 , TraesCS3B02G451500 , TraesCS3B02G451500 , TraesCS7A02G302900
Populus -


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cDNA sequences
Sobic.007G042900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
2 Sobic.009G249700 expressed protein -
3 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
4 Sobic.005G110499 - K14006: protein transport protein SEC23
5 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
6 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
7 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
8 Sobic.006G139100 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
9 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
10 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
11 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
12 Sobic.009G131900 - K18177: cytochrome c oxidase assembly factor 4
13 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
14 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
15 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
16 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
17 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
18 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
19 Sobic.003G284000 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
20 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -


Gene co-expression network
sample Sobic007G042900 Sobic007G042900 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic009G249700 Sobic009G249700 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic004G345400--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic004G345400--Sobic010G077500 Sobic004G345400--Sobic009G249700 Sobic004G345400--Sobic007G042900 Sobic004G180900 Sobic004G180900 Sobic004G345400--Sobic004G180900 Sobic006G186400 Sobic006G186400 Sobic004G345400--Sobic006G186400 Sobic004G084500 Sobic004G084500 Sobic004G345400--Sobic004G084500 Sobic007G056500 Sobic007G056500 Sobic004G345400--Sobic007G056500 Sobic004G345400--Sobic003G394200 Sobic007G218000 Sobic007G218000 Sobic009G249700--Sobic007G218000 Sobic003G093800 Sobic003G093800 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic009G249700--Sobic004G345400 Sobic009G249700--Sobic010G169900 Sobic003G444800 Sobic003G444800 Sobic009G249700--Sobic003G444800 Sobic009G249700--Sobic007G042900 Sobic001G042200--Sobic010G077500 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic001G042200--Sobic007G042900 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic005G110499--Sobic003G189600 Sobic001G474400 Sobic001G474400 Sobic005G110499--Sobic001G474400 Sobic001G308400 Sobic001G308400 Sobic005G110499--Sobic001G308400 Sobic005G110499--Sobic003G394200 Sobic004G053500 Sobic004G053500 Sobic005G110499--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic005G110499--Sobic002G401500 Sobic006G021700 Sobic006G021700 Sobic005G110499--Sobic006G021700 Sobic002G371700 Sobic002G371700 Sobic005G110499--Sobic002G371700 Sobic003G209200 Sobic003G209200 Sobic005G110499--Sobic003G209200 Sobic010G169900--Sobic001G308400 Sobic002G079000 Sobic002G079000 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic002G355800 Sobic002G355800 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic006G128100 Sobic006G128100 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic001G389200 Sobic001G389200 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 Sobic010G223400 Sobic010G223400 Sobic003G182300--Sobic010G223400 Sobic003G363700 Sobic003G363700 Sobic003G182300--Sobic003G363700 Sobic001G449900 Sobic001G449900 Sobic003G182300--Sobic001G449900 Sobic003G182300--Sobic001G474400 Sobic003G193500 Sobic003G193500 Sobic003G182300--Sobic003G193500 Sobic003G182300--Sobic010G169900 Sobic001G015400 Sobic001G015400 Sobic003G182300--Sobic001G015400 Sobic003G182300--Sobic007G042900 Sobic003G181700 Sobic003G181700 Sobic003G182300--Sobic003G181700 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic003G394200--Sobic006G128100 Sobic003G394200--Sobic010G223400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000 Sobic004G145000 Sobic004G145000 Sobic006G139100--Sobic004G145000 Sobic002G313900 Sobic002G313900 Sobic006G139100--Sobic002G313900 Sobic006G139100--Sobic007G042900 Sobic003G150900 Sobic003G150900 Sobic006G139100--Sobic003G150900 Sobic003G227100 Sobic003G227100 Sobic006G139100--Sobic003G227100 Sobic006G139100--Sobic001G005600 Sobic003G050900 Sobic003G050900 Sobic006G139100--Sobic003G050900 Sobic002G150700 Sobic002G150700 Sobic006G139100--Sobic002G150700 Sobic003G046300 Sobic003G046300 Sobic006G139100--Sobic003G046300 Sobic009G160600 Sobic009G160600 Sobic001G005600--Sobic009G160600 Sobic010G129600 Sobic010G129600 Sobic001G005600--Sobic010G129600 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic004G068500 Sobic004G068500 Sobic001G005600--Sobic004G068500 Sobic008G021000 Sobic008G021000 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900
Octagon: transcription factors


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