Gene annotation
Transcriptome id Sobic.003G182300.2,Sobic.003G182300.1
Synonym SIS3, Sb03g024030
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1W0VXY3 , C5XMW0
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF120
NCBI CDD -
KEGG Orthology K16284; E3 ubiquitin-protein ligase SIS3
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G47990 : SUGAR-INSENSITIVE 3
RAP-DB (Rice) LOC_Os05g05280.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a028824
Brachypodium KQK08173
Barley HORVU1Hr1G000010.1 , HORVU1Hr1G000010.2 , HORVU1Hr1G000010.4 , HORVU6Hr1G084630.3 , HORVU6Hr1G084630.2 , HORVU6Hr1G084630.1 , HORVU1Hr1G000010.8 , HORVU1Hr1G000010.3 , HORVU1Hr1G000010.5 , HORVU1Hr1G000010.6 , HORVU1Hr1G000010.7
Wheat TraesCS1A02G002000 , TraesCS1D02G004000 , TraesCS1B02G000900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G182300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G223400 expressed protein -
2 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
3 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
4 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
5 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
6 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
7 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
8 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
9 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
10 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
11 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.001G384400 glucosyltransferase, putative, expressed K03848: alpha-1,3-glucosyltransferase
13 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
14 Sobic.007G005500 ECT protein, putative, expressed -
15 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.010G000800 PHD-finger domain containing protein, expressed -
17 Sobic.001G358500 GA20734-PA, putative, expressed -
18 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
19 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
20 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM


Gene co-expression network
sample Sobic003G182300 Sobic003G182300 Sobic010G223400 Sobic010G223400 Sobic003G182300--Sobic010G223400 Sobic003G363700 Sobic003G363700 Sobic003G182300--Sobic003G363700 Sobic001G449900 Sobic001G449900 Sobic003G182300--Sobic001G449900 Sobic001G474400 Sobic001G474400 Sobic003G182300--Sobic001G474400 Sobic003G193500 Sobic003G193500 Sobic003G182300--Sobic003G193500 Sobic010G169900 Sobic010G169900 Sobic003G182300--Sobic010G169900 Sobic001G015400 Sobic001G015400 Sobic003G182300--Sobic001G015400 Sobic007G042900 Sobic007G042900 Sobic003G182300--Sobic007G042900 Sobic003G181700 Sobic003G181700 Sobic003G182300--Sobic003G181700 Sobic009G122500 Sobic009G122500 Sobic010G223400--Sobic009G122500 Sobic003G394200 Sobic003G394200 Sobic010G223400--Sobic003G394200 Sobic005G059500 Sobic005G059500 Sobic010G223400--Sobic005G059500 Sobic001G193100 Sobic001G193100 Sobic010G223400--Sobic001G193100 Sobic010G223400--Sobic003G182300 Sobic005G114500 Sobic005G114500 Sobic010G223400--Sobic005G114500 Sobic010G223400--Sobic001G474400 Sobic004G078700 Sobic004G078700 Sobic010G223400--Sobic004G078700 Sobic001G012900 Sobic001G012900 Sobic010G223400--Sobic001G012900 Sobic003G379200 Sobic003G379200 Sobic003G363700--Sobic003G379200 Sobic001G237600 Sobic001G237600 Sobic003G363700--Sobic001G237600 Sobic004G265500 Sobic004G265500 Sobic003G363700--Sobic004G265500 Sobic002G371700 Sobic002G371700 Sobic003G363700--Sobic002G371700 Sobic009G228000 Sobic009G228000 Sobic003G363700--Sobic009G228000 Sobic002G374300 Sobic002G374300 Sobic003G363700--Sobic002G374300 Sobic003G043000 Sobic003G043000 Sobic003G363700--Sobic003G043000 Sobic010G000800 Sobic010G000800 Sobic003G363700--Sobic010G000800 Sobic003G363700--Sobic003G182300 Sobic010G223300 Sobic010G223300 Sobic001G449900--Sobic010G223300 Sobic002G020700 Sobic002G020700 Sobic001G449900--Sobic002G020700 Sobic008G085700 Sobic008G085700 Sobic001G449900--Sobic008G085700 Sobic001G301200 Sobic001G301200 Sobic001G449900--Sobic001G301200 Sobic003G189600 Sobic003G189600 Sobic001G449900--Sobic003G189600 Sobic001G428800 Sobic001G428800 Sobic001G449900--Sobic001G428800 Sobic003G029600 Sobic003G029600 Sobic001G449900--Sobic003G029600 Sobic010G020400 Sobic010G020400 Sobic001G449900--Sobic010G020400 Sobic007G005500 Sobic007G005500 Sobic001G449900--Sobic007G005500 Sobic005G110499 Sobic005G110499 Sobic001G474400--Sobic005G110499 Sobic003G397900 Sobic003G397900 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G097900 Sobic001G097900 Sobic001G474400--Sobic001G097900 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic001G474400--Sobic010G223400 Sobic001G467100 Sobic001G467100 Sobic001G474400--Sobic001G467100 Sobic006G265600 Sobic006G265600 Sobic001G474400--Sobic006G265600 Sobic003G302200 Sobic003G302200 Sobic003G193500--Sobic003G302200 Sobic003G193500--Sobic003G182300 Sobic009G128500 Sobic009G128500 Sobic003G193500--Sobic009G128500 Sobic003G193500--Sobic007G042900 Sobic006G039400 Sobic006G039400 Sobic003G193500--Sobic006G039400 Sobic001G019800 Sobic001G019800 Sobic003G193500--Sobic001G019800 Sobic003G193500--Sobic010G169900 Sobic002G079000 Sobic002G079000 Sobic003G193500--Sobic002G079000 Sobic009G077600 Sobic009G077600 Sobic003G193500--Sobic009G077600 Sobic001G308400 Sobic001G308400 Sobic010G169900--Sobic001G308400 Sobic010G169900--Sobic002G079000 Sobic010G169900--Sobic009G128500 Sobic002G355800 Sobic002G355800 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic006G128100 Sobic006G128100 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic001G389200 Sobic001G389200 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 Sobic001G099900 Sobic001G099900 Sobic001G015400--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic001G015400--Sobic004G208500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic001G015400--Sobic003G182300 Sobic002G398700 Sobic002G398700 Sobic001G015400--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic001G015400--Sobic006G106300 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic009G249700 Sobic009G249700 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic007G042900--Sobic005G110499 Sobic007G042900--Sobic010G169900 Sobic007G042900--Sobic003G182300 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic003G181700--Sobic009G194000 Sobic003G021600 Sobic003G021600 Sobic003G181700--Sobic003G021600 Sobic004G122900 Sobic004G122900 Sobic003G181700--Sobic004G122900 Sobic003G181700--Sobic001G490900 Sobic003G181700--Sobic010G169900 Sobic003G181700--Sobic002G227500 Sobic006G060000 Sobic006G060000 Sobic003G181700--Sobic006G060000 Sobic003G181700--Sobic009G122500 Sobic007G172700 Sobic007G172700 Sobic003G181700--Sobic007G172700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.