Gene annotation
Transcriptome id Sobic.001G449900.1
Synonym Sb01g042290
Functional annotation conserved oligomeric complex COG6 family protein, expressed
UniProt A0A1Z5SAM4
Pfam PF06419
Panther DB PTHR21506
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0017119; Golgi transport complex GO:0006891intra-Golgi vesicle-mediated transport


Orthologs (automatic annotation)
TAIR AT1G31780 : -
RAP-DB (Rice) LOC_Os03g12460.1 : conserved oligomeric complex COG6 family protein, expressed
MaizeGDB (Corn) Zm00025a001390
Brachypodium KQK22782
Barley HORVU4Hr1G066300.1 , HORVU4Hr1G066300.2
Wheat TraesCS4B02G238800 , TraesCS4B02G238800 , TraesCS4D02G248500 , TraesCS4A02G062100
Populus PNT42883 , PNT42884


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cDNA sequences
Sobic.001G449900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
2 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
3 Sobic.008G085700 exocyst complex component 5, putative, expressed -
4 Sobic.001G301200 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
5 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
6 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
7 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
8 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
9 Sobic.007G005500 ECT protein, putative, expressed -
10 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
11 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
12 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
13 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
14 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
15 Sobic.010G000800 PHD-finger domain containing protein, expressed -
16 Sobic.001G384400 glucosyltransferase, putative, expressed K03848: alpha-1,3-glucosyltransferase
17 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
18 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
19 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
20 Sobic.005G110499 - K14006: protein transport protein SEC23


Gene co-expression network
sample Sobic001G449900 Sobic001G449900 Sobic010G223300 Sobic010G223300 Sobic001G449900--Sobic010G223300 Sobic002G020700 Sobic002G020700 Sobic001G449900--Sobic002G020700 Sobic008G085700 Sobic008G085700 Sobic001G449900--Sobic008G085700 Sobic001G301200 Sobic001G301200 Sobic001G449900--Sobic001G301200 Sobic003G189600 Sobic003G189600 Sobic001G449900--Sobic003G189600 Sobic001G428800 Sobic001G428800 Sobic001G449900--Sobic001G428800 Sobic003G029600 Sobic003G029600 Sobic001G449900--Sobic003G029600 Sobic010G020400 Sobic010G020400 Sobic001G449900--Sobic010G020400 Sobic007G005500 Sobic007G005500 Sobic001G449900--Sobic007G005500 Sobic008G055900 Sobic008G055900 Sobic010G223300--Sobic008G055900 Sobic010G223300--Sobic001G449900 Sobic010G223300--Sobic002G020700 Sobic003G338500 Sobic003G338500 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic004G092500 Sobic004G092500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic010G223300--Sobic002G008800 Sobic006G180000 Sobic006G180000 Sobic010G223300--Sobic006G180000 Sobic002G020700--Sobic010G020400 Sobic002G020700--Sobic008G085700 Sobic002G020700--Sobic008G055900 Sobic001G333100 Sobic001G333100 Sobic002G020700--Sobic001G333100 Sobic002G020700--Sobic010G223300 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic007G054800 Sobic007G054800 Sobic002G020700--Sobic007G054800 Sobic008G085700--Sobic002G020700 Sobic008G085700--Sobic001G449900 Sobic002G070600 Sobic002G070600 Sobic008G085700--Sobic002G070600 Sobic008G085700--Sobic010G020400 Sobic008G085700--Sobic008G055900 Sobic005G110499 Sobic005G110499 Sobic008G085700--Sobic005G110499 Sobic001G049400 Sobic001G049400 Sobic008G085700--Sobic001G049400 Sobic001G161700 Sobic001G161700 Sobic008G085700--Sobic001G161700 Sobic010G192600 Sobic010G192600 Sobic008G085700--Sobic010G192600 Sobic004G337800 Sobic004G337800 Sobic001G301200--Sobic004G337800 Sobic001G301200--Sobic001G449900 Sobic006G021700 Sobic006G021700 Sobic001G301200--Sobic006G021700 Sobic001G301200--Sobic003G029600 Sobic008G124800 Sobic008G124800 Sobic001G301200--Sobic008G124800 Sobic001G404600 Sobic001G404600 Sobic001G301200--Sobic001G404600 Sobic002G340900 Sobic002G340900 Sobic001G301200--Sobic002G340900 Sobic002G308500 Sobic002G308500 Sobic001G301200--Sobic002G308500 Sobic003G171400 Sobic003G171400 Sobic001G301200--Sobic003G171400 Sobic003G189600--Sobic005G110499 Sobic010G185400 Sobic010G185400 Sobic003G189600--Sobic010G185400 Sobic007G218000 Sobic007G218000 Sobic003G189600--Sobic007G218000 Sobic006G077200 Sobic006G077200 Sobic003G189600--Sobic006G077200 Sobic003G394200 Sobic003G394200 Sobic003G189600--Sobic003G394200 Sobic006G224800 Sobic006G224800 Sobic003G189600--Sobic006G224800 Sobic009G249700 Sobic009G249700 Sobic003G189600--Sobic009G249700 Sobic001G308400 Sobic001G308400 Sobic003G189600--Sobic001G308400 Sobic004G322400 Sobic004G322400 Sobic003G189600--Sobic004G322400 Sobic001G358500 Sobic001G358500 Sobic001G428800--Sobic001G358500 Sobic001G428800--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G428800--Sobic010G230600 Sobic001G428800--Sobic004G092500 Sobic001G428800--Sobic010G223300 Sobic001G211900 Sobic001G211900 Sobic001G428800--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic001G428800--Sobic001G099900 Sobic001G428800--Sobic010G020400 Sobic009G139300 Sobic009G139300 Sobic001G428800--Sobic009G139300 Sobic001G117800 Sobic001G117800 Sobic003G029600--Sobic001G117800 Sobic003G314700 Sobic003G314700 Sobic003G029600--Sobic003G314700 Sobic003G029600--Sobic002G070600 Sobic003G029600--Sobic002G340900 Sobic003G029600--Sobic001G301200 Sobic003G029600--Sobic001G449900 Sobic003G029600--Sobic008G124800 Sobic009G118900 Sobic009G118900 Sobic003G029600--Sobic009G118900 Sobic001G437400 Sobic001G437400 Sobic003G029600--Sobic001G437400 Sobic010G020400--Sobic002G020700 Sobic010G020400--Sobic001G049400 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic010G020400--Sobic002G008800 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic010G020400--Sobic001G333100 Sobic010G020400--Sobic010G223300 Sobic003G209200 Sobic003G209200 Sobic007G005500--Sobic003G209200 Sobic004G241900 Sobic004G241900 Sobic007G005500--Sobic004G241900 Sobic005G062200 Sobic005G062200 Sobic007G005500--Sobic005G062200 Sobic007G005500--Sobic006G260500 Sobic007G005500--Sobic006G021700 Sobic010G169900 Sobic010G169900 Sobic007G005500--Sobic010G169900 Sobic010G000800 Sobic010G000800 Sobic007G005500--Sobic010G000800 Sobic004G261600 Sobic004G261600 Sobic007G005500--Sobic004G261600 Sobic006G077300 Sobic006G077300 Sobic007G005500--Sobic006G077300
Octagon: transcription factors


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