Gene annotation
Transcriptome id Sobic.001G301200.1
Synonym Sb01g029300, EMB30, GN, VAN7
Functional annotation pattern formation protein EMB30, putative, expressed
UniProt C5WSF5
Pfam PF12783 PF01369
Panther DB PTHR10663 PTHR10663:SF203
NCBI CDD -
KEGG Orthology K18443; golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
Gene Ontology GO:0005086; ARF guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT1G13980 : sec7 domain-containing protein
RAP-DB (Rice) LOC_Os02g22090.1 : pattern formation protein EMB30, putative, expressed
MaizeGDB (Corn) Zm00025a003338 , Zm00025a051982
Brachypodium KQK23497
Barley HORVU3Hr1G017750.1 , HORVU3Hr1G017750.3 , HORVU3Hr1G017750.5 , HORVU3Hr1G017750.4 , HORVU3Hr1G017750.7 , HORVU3Hr1G017750.6 , HORVU3Hr1G017750.9 , HORVU3Hr1G017750.8 , HORVU3Hr1G017750.11 , HORVU3Hr1G017750.10 , HORVU5Hr1G088970.2 , HORVU5Hr1G088970.4
Wheat TraesCS5B02G363900 , TraesCS5D02G370200 , TraesCS5A02G361300 , TraesCS3A02G098600 , TraesCS3B02G114200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G337800 UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed K11718: UDP-glucose:glycoprotein glucosyltransferase
2 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
3 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
4 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
5 Sobic.008G124800 expressed protein -
6 Sobic.001G404600 expressed protein K18270: Rab3 GTPase-activating protein catalytic subunit
7 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
8 Sobic.002G308500 peptide-Nasparagine amidase, putative, expressed K01456: E3.5.1.52, NGLY1, peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase
9 Sobic.003G171400 HEAT repeat family protein, putative, expressed -
10 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
11 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
12 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
13 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
14 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
15 Sobic.009G084900 expressed protein -
16 Sobic.003G314700 expressed protein -
17 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
18 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
19 Sobic.003G233400 expressed protein -
20 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -


Gene co-expression network
sample Sobic001G301200 Sobic001G301200 Sobic004G337800 Sobic004G337800 Sobic001G301200--Sobic004G337800 Sobic001G449900 Sobic001G449900 Sobic001G301200--Sobic001G449900 Sobic006G021700 Sobic006G021700 Sobic001G301200--Sobic006G021700 Sobic003G029600 Sobic003G029600 Sobic001G301200--Sobic003G029600 Sobic008G124800 Sobic008G124800 Sobic001G301200--Sobic008G124800 Sobic001G404600 Sobic001G404600 Sobic001G301200--Sobic001G404600 Sobic002G340900 Sobic002G340900 Sobic001G301200--Sobic002G340900 Sobic002G308500 Sobic002G308500 Sobic001G301200--Sobic002G308500 Sobic003G171400 Sobic003G171400 Sobic001G301200--Sobic003G171400 Sobic004G337800--Sobic001G301200 Sobic010G059500 Sobic010G059500 Sobic004G337800--Sobic010G059500 Sobic009G084900 Sobic009G084900 Sobic004G337800--Sobic009G084900 Sobic003G405500 Sobic003G405500 Sobic004G337800--Sobic003G405500 Sobic009G131300 Sobic009G131300 Sobic004G337800--Sobic009G131300 Sobic001G214600 Sobic001G214600 Sobic004G337800--Sobic001G214600 Sobic002G227500 Sobic002G227500 Sobic004G337800--Sobic002G227500 Sobic004G337800--Sobic006G021700 Sobic004G337800--Sobic008G124800 Sobic010G223300 Sobic010G223300 Sobic001G449900--Sobic010G223300 Sobic002G020700 Sobic002G020700 Sobic001G449900--Sobic002G020700 Sobic008G085700 Sobic008G085700 Sobic001G449900--Sobic008G085700 Sobic001G449900--Sobic001G301200 Sobic003G189600 Sobic003G189600 Sobic001G449900--Sobic003G189600 Sobic001G428800 Sobic001G428800 Sobic001G449900--Sobic001G428800 Sobic001G449900--Sobic003G029600 Sobic010G020400 Sobic010G020400 Sobic001G449900--Sobic010G020400 Sobic007G005500 Sobic007G005500 Sobic001G449900--Sobic007G005500 Sobic006G021700--Sobic008G124800 Sobic006G077300 Sobic006G077300 Sobic006G021700--Sobic006G077300 Sobic006G021700--Sobic002G340900 Sobic005G059500 Sobic005G059500 Sobic006G021700--Sobic005G059500 Sobic003G209200 Sobic003G209200 Sobic006G021700--Sobic003G209200 Sobic003G346400 Sobic003G346400 Sobic006G021700--Sobic003G346400 Sobic010G000800 Sobic010G000800 Sobic006G021700--Sobic010G000800 Sobic006G021700--Sobic007G005500 Sobic005G110499 Sobic005G110499 Sobic006G021700--Sobic005G110499 Sobic001G117800 Sobic001G117800 Sobic003G029600--Sobic001G117800 Sobic003G314700 Sobic003G314700 Sobic003G029600--Sobic003G314700 Sobic002G070600 Sobic002G070600 Sobic003G029600--Sobic002G070600 Sobic003G029600--Sobic002G340900 Sobic003G029600--Sobic001G301200 Sobic003G029600--Sobic001G449900 Sobic003G029600--Sobic008G124800 Sobic009G118900 Sobic009G118900 Sobic003G029600--Sobic009G118900 Sobic001G437400 Sobic001G437400 Sobic003G029600--Sobic001G437400 Sobic008G124800--Sobic002G340900 Sobic008G124800--Sobic006G021700 Sobic007G019300 Sobic007G019300 Sobic008G124800--Sobic007G019300 Sobic004G322400 Sobic004G322400 Sobic008G124800--Sobic004G322400 Sobic008G124800--Sobic001G404600 Sobic003G233400 Sobic003G233400 Sobic008G124800--Sobic003G233400 Sobic008G124800--Sobic002G308500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic001G404600--Sobic008G124800 Sobic001G404600--Sobic003G233400 Sobic001G404600--Sobic002G308500 Sobic001G287500 Sobic001G287500 Sobic001G404600--Sobic001G287500 Sobic001G404600--Sobic002G020700 Sobic001G404600--Sobic009G084900 Sobic001G404600--Sobic004G322400 Sobic001G404600--Sobic006G021700 Sobic001G404600--Sobic001G301200 Sobic002G340900--Sobic008G124800 Sobic002G340900--Sobic001G437400 Sobic002G340900--Sobic006G021700 Sobic004G053500 Sobic004G053500 Sobic002G340900--Sobic004G053500 Sobic002G340900--Sobic001G117800 Sobic002G340900--Sobic009G118900 Sobic002G340900--Sobic003G029600 Sobic004G223300 Sobic004G223300 Sobic002G340900--Sobic004G223300 Sobic001G474400 Sobic001G474400 Sobic002G340900--Sobic001G474400 Sobic002G308500--Sobic008G124800 Sobic002G308500--Sobic003G233400 Sobic008G099800 Sobic008G099800 Sobic002G308500--Sobic008G099800 Sobic010G228500 Sobic010G228500 Sobic002G308500--Sobic010G228500 Sobic002G308500--Sobic001G404600 Sobic002G308500--Sobic007G019300 Sobic001G137000 Sobic001G137000 Sobic002G308500--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic002G308500--Sobic003G312100 Sobic001G426600 Sobic001G426600 Sobic002G308500--Sobic001G426600 Sobic004G040500 Sobic004G040500 Sobic003G171400--Sobic004G040500 Sobic003G221400 Sobic003G221400 Sobic003G171400--Sobic003G221400 Sobic002G147600 Sobic002G147600 Sobic003G171400--Sobic002G147600 Sobic001G255800 Sobic001G255800 Sobic003G171400--Sobic001G255800 Sobic003G171400--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic003G171400--Sobic002G179400 Sobic001G493700 Sobic001G493700 Sobic003G171400--Sobic001G493700 Sobic002G335600 Sobic002G335600 Sobic003G171400--Sobic002G335600 Sobic008G085300 Sobic008G085300 Sobic003G171400--Sobic008G085300
Octagon: transcription factors


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