Gene annotation
Transcriptome id Sobic.001G404600.2,Sobic.001G404600.1
Synonym Sb01g038270
Functional annotation expressed protein
UniProt A0A1B6QQA1 , C5WNH2
Pfam PF13890
Panther DB PTHR21422 PTHR21422:SF3
NCBI CDD -
KEGG Orthology K18270; Rab3 GTPase-activating protein catalytic subunit
Gene Ontology GO:0005096; GTPase activator activity


Orthologs (automatic annotation)
TAIR AT5G58510 : -
RAP-DB (Rice) LOC_Os03g18440.1 : expressed protein
MaizeGDB (Corn) Zm00025a052636
Brachypodium KQK22112
Barley HORVU4Hr1G055820.6 , HORVU4Hr1G055820.7 , HORVU4Hr1G055820.4 , HORVU4Hr1G055820.5 , HORVU4Hr1G055820.2 , HORVU4Hr1G055820.3 , HORVU4Hr1G055820.1 , HORVU4Hr1G055820.8 , HORVU4Hr1G055820.9 , HORVU4Hr1G055820.27 , HORVU4Hr1G055820.18 , HORVU4Hr1G055820.19 , HORVU4Hr1G055820.14 , HORVU4Hr1G055820.15 , HORVU4Hr1G055820.16 , HORVU4Hr1G055820.17 , HORVU4Hr1G055820.10 , HORVU4Hr1G055820.11 , HORVU4Hr1G055820.12 , HORVU4Hr1G055820.13 , HORVU4Hr1G055820.21 , HORVU4Hr1G055820.20 , HORVU4Hr1G055820.23 , HORVU4Hr1G055820.22 , HORVU4Hr1G055820.25 , HORVU4Hr1G055820.24 , HORVU4Hr1G055820.26 , HORVU4Hr1G055820.29 , HORVU4Hr1G055820.28 , HORVU4Hr1G055820.36 , HORVU4Hr1G055820.34 , HORVU4Hr1G055820.35 , HORVU4Hr1G055820.32 , HORVU4Hr1G055820.33 , HORVU4Hr1G055820.30 , HORVU4Hr1G055820.31
Wheat TraesCS4D02G193100 , TraesCS4D02G193100 , TraesCS4A02G112000 , TraesCS4A02G112000 , TraesCS4B02G191900 , TraesCS4B02G191900 , TraesCS4A02G112000 , TraesCS4B02G191900 , TraesCS4B02G191900 , TraesCS4D02G193100 , TraesCS4A02G112000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G124800 expressed protein -
2 Sobic.003G233400 expressed protein -
3 Sobic.002G308500 peptide-Nasparagine amidase, putative, expressed K01456: E3.5.1.52, NGLY1, peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase
4 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
5 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
6 Sobic.009G084900 expressed protein -
7 Sobic.004G322400 WD40-like, putative, expressed -
8 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
9 Sobic.001G301200 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
10 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
11 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
12 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
13 Sobic.004G204100 expressed protein -
14 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
15 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
16 Sobic.010G223100 PAP/25A associated domain containing protein, putative, expressed -
17 Sobic.003G249600 vacuolar protein sorting-associated protein 16, putative, expressed -
18 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
19 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
20 Sobic.001G426600 SH3 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G404600 Sobic001G404600 Sobic008G124800 Sobic008G124800 Sobic001G404600--Sobic008G124800 Sobic003G233400 Sobic003G233400 Sobic001G404600--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic001G404600--Sobic002G308500 Sobic001G287500 Sobic001G287500 Sobic001G404600--Sobic001G287500 Sobic002G020700 Sobic002G020700 Sobic001G404600--Sobic002G020700 Sobic009G084900 Sobic009G084900 Sobic001G404600--Sobic009G084900 Sobic004G322400 Sobic004G322400 Sobic001G404600--Sobic004G322400 Sobic006G021700 Sobic006G021700 Sobic001G404600--Sobic006G021700 Sobic001G301200 Sobic001G301200 Sobic001G404600--Sobic001G301200 Sobic002G340900 Sobic002G340900 Sobic008G124800--Sobic002G340900 Sobic008G124800--Sobic006G021700 Sobic007G019300 Sobic007G019300 Sobic008G124800--Sobic007G019300 Sobic008G124800--Sobic004G322400 Sobic008G124800--Sobic001G404600 Sobic008G124800--Sobic003G233400 Sobic008G124800--Sobic002G308500 Sobic003G405500 Sobic003G405500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic003G233400--Sobic001G287500 Sobic003G072200 Sobic003G072200 Sobic003G233400--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic003G233400--Sobic007G098500 Sobic001G137000 Sobic001G137000 Sobic003G233400--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic003G233400--Sobic003G312100 Sobic008G092600 Sobic008G092600 Sobic003G233400--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic003G233400--Sobic002G396500 Sobic002G179400 Sobic002G179400 Sobic003G233400--Sobic002G179400 Sobic004G051200 Sobic004G051200 Sobic003G233400--Sobic004G051200 Sobic002G308500--Sobic008G124800 Sobic002G308500--Sobic003G233400 Sobic008G099800 Sobic008G099800 Sobic002G308500--Sobic008G099800 Sobic010G228500 Sobic010G228500 Sobic002G308500--Sobic010G228500 Sobic002G308500--Sobic001G404600 Sobic002G308500--Sobic007G019300 Sobic002G308500--Sobic001G137000 Sobic002G308500--Sobic003G312100 Sobic001G426600 Sobic001G426600 Sobic002G308500--Sobic001G426600 Sobic001G287500--Sobic003G233400 Sobic001G287500--Sobic003G072200 Sobic001G287500--Sobic007G098500 Sobic001G287500--Sobic004G051200 Sobic001G287500--Sobic008G092600 Sobic001G347500 Sobic001G347500 Sobic001G287500--Sobic001G347500 Sobic001G287500--Sobic001G426600 Sobic004G040500 Sobic004G040500 Sobic001G287500--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic001G287500--Sobic004G204100 Sobic010G020400 Sobic010G020400 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic008G055900 Sobic008G055900 Sobic002G020700--Sobic008G055900 Sobic001G333100 Sobic001G333100 Sobic002G020700--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic007G054800 Sobic007G054800 Sobic002G020700--Sobic007G054800 Sobic010G059500 Sobic010G059500 Sobic009G084900--Sobic010G059500 Sobic009G084900--Sobic003G072200 Sobic001G493200 Sobic001G493200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic004G322400--Sobic002G401500 Sobic002G042600 Sobic002G042600 Sobic004G322400--Sobic002G042600 Sobic004G322400--Sobic009G131300 Sobic010G223100 Sobic010G223100 Sobic004G322400--Sobic010G223100 Sobic004G322400--Sobic008G124800 Sobic004G322400--Sobic002G179400 Sobic004G322400--Sobic010G059500 Sobic001G065100 Sobic001G065100 Sobic004G322400--Sobic001G065100 Sobic010G275500 Sobic010G275500 Sobic004G322400--Sobic010G275500 Sobic006G021700--Sobic008G124800 Sobic006G077300 Sobic006G077300 Sobic006G021700--Sobic006G077300 Sobic006G021700--Sobic002G340900 Sobic005G059500 Sobic005G059500 Sobic006G021700--Sobic005G059500 Sobic003G209200 Sobic003G209200 Sobic006G021700--Sobic003G209200 Sobic003G346400 Sobic003G346400 Sobic006G021700--Sobic003G346400 Sobic010G000800 Sobic010G000800 Sobic006G021700--Sobic010G000800 Sobic007G005500 Sobic007G005500 Sobic006G021700--Sobic007G005500 Sobic005G110499 Sobic005G110499 Sobic006G021700--Sobic005G110499 Sobic004G337800 Sobic004G337800 Sobic001G301200--Sobic004G337800 Sobic001G301200--Sobic001G449900 Sobic001G301200--Sobic006G021700 Sobic003G029600 Sobic003G029600 Sobic001G301200--Sobic003G029600 Sobic001G301200--Sobic008G124800 Sobic001G301200--Sobic001G404600 Sobic001G301200--Sobic002G340900 Sobic001G301200--Sobic002G308500 Sobic003G171400 Sobic003G171400 Sobic001G301200--Sobic003G171400
Octagon: transcription factors


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