Gene annotation
Transcriptome id Sobic.006G021700.1
Synonym VPS54, Sb06g002040, ATVPS54
Functional annotation expressed protein
UniProt C5YCN0
Pfam PF10475 PF07928
Panther DB PTHR12965 PTHR12965:SF0
NCBI CDD KOG2115; Vacuolar sorting protein VPS45
KEGG Orthology K17600; vacuolar protein sorting-associated protein 54
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19490 : VPS54
RAP-DB (Rice) LOC_Os04g13470.1 : expressed protein
MaizeGDB (Corn) Zm00025a012383 , Zm00025a055641
Brachypodium KQJ81874 , KQJ81871 , KQJ81872 , KQJ81873
Barley HORVU2Hr1G009840.3 , HORVU2Hr1G009840.2 , HORVU2Hr1G009840.1 , HORVU2Hr1G009840.7 , HORVU2Hr1G009840.6 , HORVU2Hr1G009840.5 , HORVU2Hr1G009840.4
Wheat TraesCS2B02G086800 , TraesCS2B02G086800 , TraesCS2A02G072500 , TraesCS2A02G072500 , TraesCS2A02G072500 , TraesCS2D02G071500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G124800 expressed protein -
2 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
3 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
4 Sobic.005G059500 expressed protein -
5 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
6 Sobic.003G346400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
7 Sobic.010G000800 PHD-finger domain containing protein, expressed -
8 Sobic.007G005500 ECT protein, putative, expressed -
9 Sobic.005G110499 - K14006: protein transport protein SEC23
10 Sobic.006G260500 expressed protein -
11 Sobic.001G301200 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
12 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
13 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
14 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
15 Sobic.003G023300 Alg9-like mannosyltransferase protein, putative, expressed K03846: alpha-1,2-mannosyltransferase
16 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
17 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
18 Sobic.001G404600 expressed protein K18270: Rab3 GTPase-activating protein catalytic subunit
19 Sobic.001G308400 expressed protein -
20 Sobic.004G322400 WD40-like, putative, expressed -


Gene co-expression network
sample Sobic006G021700 Sobic006G021700 Sobic008G124800 Sobic008G124800 Sobic006G021700--Sobic008G124800 Sobic006G077300 Sobic006G077300 Sobic006G021700--Sobic006G077300 Sobic002G340900 Sobic002G340900 Sobic006G021700--Sobic002G340900 Sobic005G059500 Sobic005G059500 Sobic006G021700--Sobic005G059500 Sobic003G209200 Sobic003G209200 Sobic006G021700--Sobic003G209200 Sobic003G346400 Sobic003G346400 Sobic006G021700--Sobic003G346400 Sobic010G000800 Sobic010G000800 Sobic006G021700--Sobic010G000800 Sobic007G005500 Sobic007G005500 Sobic006G021700--Sobic007G005500 Sobic005G110499 Sobic005G110499 Sobic006G021700--Sobic005G110499 Sobic008G124800--Sobic002G340900 Sobic008G124800--Sobic006G021700 Sobic007G019300 Sobic007G019300 Sobic008G124800--Sobic007G019300 Sobic004G322400 Sobic004G322400 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic003G233400 Sobic003G233400 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic003G405500 Sobic003G405500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic006G260500 Sobic006G260500 Sobic006G077300--Sobic006G260500 Sobic006G077300--Sobic006G021700 Sobic006G077300--Sobic003G209200 Sobic001G056800 Sobic001G056800 Sobic006G077300--Sobic001G056800 Sobic006G077300--Sobic002G401500 Sobic003G114400 Sobic003G114400 Sobic006G077300--Sobic003G114400 Sobic006G077300--Sobic007G005500 Sobic005G062200 Sobic005G062200 Sobic006G077300--Sobic005G062200 Sobic002G042600 Sobic002G042600 Sobic006G077300--Sobic002G042600 Sobic002G340900--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic002G340900--Sobic001G437400 Sobic002G340900--Sobic006G021700 Sobic004G053500 Sobic004G053500 Sobic002G340900--Sobic004G053500 Sobic001G117800 Sobic001G117800 Sobic002G340900--Sobic001G117800 Sobic009G118900 Sobic009G118900 Sobic002G340900--Sobic009G118900 Sobic003G029600 Sobic003G029600 Sobic002G340900--Sobic003G029600 Sobic004G223300 Sobic004G223300 Sobic002G340900--Sobic004G223300 Sobic001G474400 Sobic001G474400 Sobic002G340900--Sobic001G474400 Sobic005G059500--Sobic006G021700 Sobic001G118000 Sobic001G118000 Sobic005G059500--Sobic001G118000 Sobic010G223400 Sobic010G223400 Sobic005G059500--Sobic010G223400 Sobic001G012900 Sobic001G012900 Sobic005G059500--Sobic001G012900 Sobic005G059500--Sobic003G346400 Sobic005G114500 Sobic005G114500 Sobic005G059500--Sobic005G114500 Sobic005G059500--Sobic001G474400 Sobic009G122500 Sobic009G122500 Sobic005G059500--Sobic009G122500 Sobic002G070600 Sobic002G070600 Sobic005G059500--Sobic002G070600 Sobic003G209200--Sobic007G005500 Sobic003G209200--Sobic006G260500 Sobic003G209200--Sobic006G077300 Sobic003G209200--Sobic006G021700 Sobic003G209200--Sobic005G062200 Sobic004G241900 Sobic004G241900 Sobic003G209200--Sobic004G241900 Sobic004G261600 Sobic004G261600 Sobic003G209200--Sobic004G261600 Sobic003G209200--Sobic005G110499 Sobic009G077600 Sobic009G077600 Sobic003G209200--Sobic009G077600 Sobic004G254800 Sobic004G254800 Sobic003G346400--Sobic004G254800 Sobic003G346400--Sobic006G021700 Sobic004G060300 Sobic004G060300 Sobic003G346400--Sobic004G060300 Sobic003G394200 Sobic003G394200 Sobic003G346400--Sobic003G394200 Sobic006G203300 Sobic006G203300 Sobic003G346400--Sobic006G203300 Sobic001G445500 Sobic001G445500 Sobic003G346400--Sobic001G445500 Sobic003G346400--Sobic003G209200 Sobic001G161700 Sobic001G161700 Sobic003G346400--Sobic001G161700 Sobic003G346400--Sobic001G012900 Sobic004G265500 Sobic004G265500 Sobic010G000800--Sobic004G265500 Sobic010G000800--Sobic004G322400 Sobic003G163200 Sobic003G163200 Sobic010G000800--Sobic003G163200 Sobic003G379200 Sobic003G379200 Sobic010G000800--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic010G000800--Sobic003G189600 Sobic002G179400 Sobic002G179400 Sobic010G000800--Sobic002G179400 Sobic006G077200 Sobic006G077200 Sobic010G000800--Sobic006G077200 Sobic006G261400 Sobic006G261400 Sobic010G000800--Sobic006G261400 Sobic002G429300 Sobic002G429300 Sobic010G000800--Sobic002G429300 Sobic007G005500--Sobic003G209200 Sobic007G005500--Sobic004G241900 Sobic007G005500--Sobic005G062200 Sobic007G005500--Sobic006G260500 Sobic007G005500--Sobic006G021700 Sobic010G169900 Sobic010G169900 Sobic007G005500--Sobic010G169900 Sobic007G005500--Sobic010G000800 Sobic007G005500--Sobic004G261600 Sobic007G005500--Sobic006G077300 Sobic005G110499--Sobic003G189600 Sobic005G110499--Sobic001G474400 Sobic001G308400 Sobic001G308400 Sobic005G110499--Sobic001G308400 Sobic005G110499--Sobic003G394200 Sobic005G110499--Sobic004G053500 Sobic005G110499--Sobic002G401500 Sobic005G110499--Sobic006G021700 Sobic002G371700 Sobic002G371700 Sobic005G110499--Sobic002G371700 Sobic005G110499--Sobic003G209200
Octagon: transcription factors


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