Gene annotation
Transcriptome id Sobic.002G070600.1
Synonym Sb02g005920
Functional annotation coatomer subunit gamma-2, putative, expressed
UniProt C5XCM2
Pfam PF16381 PF08752 PF01602
Panther DB PTHR10261 PTHR10261:SF5
NCBI CDD -
KEGG Orthology K17267; coatomer subunit gamma
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT4G34450 : coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative
RAP-DB (Rice) LOC_Os07g10150.1 : coatomer subunit gamma-2, putative, expressed
MaizeGDB (Corn) Zm00025a054328 , Zm00025a045326 , Zm00025a016014
Brachypodium KQK20443
Barley HORVU1Hr1G042050.14 , HORVU1Hr1G042050.15 , HORVU1Hr1G042050.16 , HORVU1Hr1G042050.17 , HORVU1Hr1G042050.10 , HORVU1Hr1G042050.11 , HORVU1Hr1G042050.12 , HORVU1Hr1G042050.13 , HORVU1Hr1G042050.18 , HORVU1Hr1G042050.19 , HORVU1Hr1G042050.21 , HORVU1Hr1G042050.20 , HORVU1Hr1G042050.22 , HORVU1Hr1G042050.8 , HORVU1Hr1G042050.9 , HORVU1Hr1G042050.6 , HORVU1Hr1G042050.7 , HORVU1Hr1G042050.4 , HORVU1Hr1G042050.5 , HORVU1Hr1G042050.2 , HORVU1Hr1G042050.3 , HORVU1Hr1G042050.1
Wheat TraesCS1D02G156000 , TraesCS1B02G174700 , TraesCS1A02G158700
Populus -


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cDNA sequences
Sobic.002G070600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G072200 coatomer subunit delta, putative, expressed -
2 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
3 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
4 Sobic.008G085700 exocyst complex component 5, putative, expressed -
5 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
6 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
7 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
8 Sobic.009G118900 expressed protein -
9 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
10 Sobic.003G134800 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
11 Sobic.004G034300 transducin family protein, putative, expressed -
12 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
13 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -
14 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
15 Sobic.005G059500 expressed protein -
16 Sobic.010G223400 expressed protein -
17 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
18 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
19 Sobic.003G346400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
20 Sobic.001G151600 OsRhmbd9 - Putative Rhomboid homologue, expressed -


Gene co-expression network
sample Sobic002G070600 Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic002G070600--Sobic008G072200 Sobic001G117800 Sobic001G117800 Sobic002G070600--Sobic001G117800 Sobic001G161700 Sobic001G161700 Sobic002G070600--Sobic001G161700 Sobic008G085700 Sobic008G085700 Sobic002G070600--Sobic008G085700 Sobic004G336300 Sobic004G336300 Sobic002G070600--Sobic004G336300 Sobic003G029600 Sobic003G029600 Sobic002G070600--Sobic003G029600 Sobic006G021700 Sobic006G021700 Sobic002G070600--Sobic006G021700 Sobic009G118900 Sobic009G118900 Sobic002G070600--Sobic009G118900 Sobic010G178600 Sobic010G178600 Sobic002G070600--Sobic010G178600 Sobic008G072200--Sobic002G070600 Sobic008G072200--Sobic001G161700 Sobic008G072200--Sobic004G336300 Sobic001G115700 Sobic001G115700 Sobic008G072200--Sobic001G115700 Sobic008G072200--Sobic001G117800 Sobic002G029300 Sobic002G029300 Sobic008G072200--Sobic002G029300 Sobic001G490500 Sobic001G490500 Sobic008G072200--Sobic001G490500 Sobic003G134800 Sobic003G134800 Sobic008G072200--Sobic003G134800 Sobic008G072200--Sobic008G085700 Sobic001G117800--Sobic003G029600 Sobic001G117800--Sobic002G070600 Sobic001G117800--Sobic009G118900 Sobic002G340900 Sobic002G340900 Sobic001G117800--Sobic002G340900 Sobic001G474400 Sobic001G474400 Sobic001G117800--Sobic001G474400 Sobic001G117800--Sobic008G072200 Sobic003G314700 Sobic003G314700 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G437400 Sobic001G437400 Sobic001G117800--Sobic001G437400 Sobic001G161700--Sobic002G070600 Sobic001G161700--Sobic008G072200 Sobic001G161700--Sobic001G490500 Sobic001G012900 Sobic001G012900 Sobic001G161700--Sobic001G012900 Sobic001G023100 Sobic001G023100 Sobic001G161700--Sobic001G023100 Sobic003G346400 Sobic003G346400 Sobic001G161700--Sobic003G346400 Sobic004G000100 Sobic004G000100 Sobic001G161700--Sobic004G000100 Sobic004G254800 Sobic004G254800 Sobic001G161700--Sobic004G254800 Sobic001G161700--Sobic008G085700 Sobic002G020700 Sobic002G020700 Sobic008G085700--Sobic002G020700 Sobic001G449900 Sobic001G449900 Sobic008G085700--Sobic001G449900 Sobic008G085700--Sobic002G070600 Sobic010G020400 Sobic010G020400 Sobic008G085700--Sobic010G020400 Sobic008G055900 Sobic008G055900 Sobic008G085700--Sobic008G055900 Sobic005G110499 Sobic005G110499 Sobic008G085700--Sobic005G110499 Sobic001G049400 Sobic001G049400 Sobic008G085700--Sobic001G049400 Sobic008G085700--Sobic001G161700 Sobic010G192600 Sobic010G192600 Sobic008G085700--Sobic010G192600 Sobic004G336300--Sobic008G072200 Sobic004G034300 Sobic004G034300 Sobic004G336300--Sobic004G034300 Sobic004G336300--Sobic002G070600 Sobic004G336300--Sobic009G118900 Sobic004G336300--Sobic001G117800 Sobic003G334700 Sobic003G334700 Sobic004G336300--Sobic003G334700 Sobic004G174700 Sobic004G174700 Sobic004G336300--Sobic004G174700 Sobic004G336300--Sobic010G178600 Sobic004G336300--Sobic001G437400 Sobic003G029600--Sobic001G117800 Sobic003G029600--Sobic003G314700 Sobic003G029600--Sobic002G070600 Sobic003G029600--Sobic002G340900 Sobic001G301200 Sobic001G301200 Sobic003G029600--Sobic001G301200 Sobic003G029600--Sobic001G449900 Sobic008G124800 Sobic008G124800 Sobic003G029600--Sobic008G124800 Sobic003G029600--Sobic009G118900 Sobic003G029600--Sobic001G437400 Sobic006G021700--Sobic008G124800 Sobic006G077300 Sobic006G077300 Sobic006G021700--Sobic006G077300 Sobic006G021700--Sobic002G340900 Sobic005G059500 Sobic005G059500 Sobic006G021700--Sobic005G059500 Sobic003G209200 Sobic003G209200 Sobic006G021700--Sobic003G209200 Sobic006G021700--Sobic003G346400 Sobic010G000800 Sobic010G000800 Sobic006G021700--Sobic010G000800 Sobic007G005500 Sobic007G005500 Sobic006G021700--Sobic007G005500 Sobic006G021700--Sobic005G110499 Sobic009G118900--Sobic001G117800 Sobic009G118900--Sobic002G340900 Sobic009G118900--Sobic001G437400 Sobic009G118900--Sobic010G178600 Sobic009G118900--Sobic003G029600 Sobic009G118900--Sobic002G070600 Sobic009G118900--Sobic004G174700 Sobic009G118900--Sobic004G336300 Sobic009G118900--Sobic003G334700 Sobic010G178600--Sobic004G174700 Sobic010G178600--Sobic009G118900 Sobic010G178600--Sobic004G034300 Sobic010G178600--Sobic002G070600 Sobic010G178600--Sobic008G072200 Sobic010G178600--Sobic003G134800 Sobic010G178600--Sobic004G336300 Sobic010G178600--Sobic001G117800 Sobic010G178600--Sobic003G029600
Octagon: transcription factors


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