Gene annotation
Transcriptome id Sobic.004G336300.1,Sobic.004G336300.2
Synonym Sb04g036416
Functional annotation AP-1 complex subunit gamma-1, putative, expressed
UniProt C5XV48 , A0A194YSY6
Pfam PF02883 PF01602
Panther DB PTHR22780 PTHR22780:SF27
NCBI CDD -
KEGG Orthology K12391; AP-1 complex subunit gamma-1
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT1G60070 : Adaptor protein complex AP-1, gamma subunit
RAP-DB (Rice) LOC_Os06g07090.1 : AP-1 complex subunit gamma-1, putative, expressed
MaizeGDB (Corn) Zm00025a032883 , Zm00025a040700 , Zm00025a049898 , Zm00025a040434 , Zm00025a041641
Brachypodium KQK19433 , KQK01236 , KQK19436 , KQK19434 , KQK19435 , KQK01235 , KQK01234 , PNT76448 , KQK01231 , KQK01233 , KQK01232 , PNT76443 , PNT76447 , PNT76446 , PNT76445 , PNT76444 , PNT69393 , PNT69392
Barley HORVU7Hr1G027050.20 , HORVU7Hr1G027050.21 , HORVU7Hr1G027050.22 , HORVU7Hr1G027050.23 , HORVU3Hr1G040310.8 , HORVU3Hr1G040310.1 , HORVU3Hr1G040310.3 , HORVU3Hr1G040310.2 , HORVU3Hr1G040310.5 , HORVU3Hr1G040310.4 , HORVU3Hr1G040310.7 , HORVU3Hr1G040310.6 , HORVU5Hr1G019420.2 , HORVU3Hr1G053020.1 , HORVU7Hr1G027050.19 , HORVU7Hr1G027050.18 , HORVU7Hr1G027050.10 , HORVU7Hr1G027050.13 , HORVU7Hr1G027050.12 , HORVU7Hr1G027050.15 , HORVU7Hr1G027050.14 , HORVU7Hr1G027050.17 , HORVU7Hr1G027050.16 , HORVU3Hr1G040310.10 , HORVU7Hr1G027050.9 , HORVU7Hr1G027050.8 , HORVU7Hr1G027050.5 , HORVU7Hr1G027050.4 , HORVU7Hr1G027050.7 , HORVU7Hr1G027050.6 , HORVU7Hr1G027050.1 , HORVU7Hr1G027050.3 , HORVU7Hr1G027050.2 , HORVU3Hr1G040310.9 , HORVU6Hr1G087920.10 , HORVU6Hr1G087920.11 , HORVU6Hr1G087920.12 , HORVU6Hr1G038880.1 , HORVU5Hr1G019420.3 , HORVU5Hr1G019420.1 , HORVU7Hr1G027050.11 , HORVU7Hr1G050510.8 , HORVU7Hr1G050510.9 , HORVU7Hr1G050510.6 , HORVU7Hr1G050510.7 , HORVU7Hr1G050510.4 , HORVU7Hr1G050510.5 , HORVU7Hr1G050510.2 , HORVU7Hr1G050510.3 , HORVU7Hr1G050510.1 , HORVU7Hr1G050510.14 , HORVU7Hr1G050510.15 , HORVU7Hr1G050510.16 , HORVU7Hr1G050510.10 , HORVU7Hr1G050510.11 , HORVU7Hr1G050510.12 , HORVU7Hr1G050510.13 , HORVU6Hr1G087920.8 , HORVU6Hr1G087920.9 , HORVU6Hr1G087920.6 , HORVU6Hr1G087920.7 , HORVU6Hr1G087920.4 , HORVU6Hr1G087920.5 , HORVU6Hr1G087920.2 , HORVU6Hr1G087920.3 , HORVU6Hr1G087920.1
Wheat TraesCS7A02G129800 , TraesCS7A02G129800 , TraesCS7A02G129800 , TraesCS7A02G129800 , TraesCS7A02G129800 , TraesCS6B02G410900 , TraesCS7D02G128900 , TraesCS7D02G128900 , TraesCS7D02G128900 , TraesCS6B02G410900 , TraesCS6D02G357400 , TraesCS6B02G410900 , TraesCS6B02G410900 , TraesCS6B02G410900 , TraesCS7D02G128900 , TraesCS6A02G373200 , TraesCS7A02G129800 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS7B02G029800 , TraesCS6A02G373200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G072200 coatomer subunit delta, putative, expressed -
2 Sobic.004G034300 transducin family protein, putative, expressed -
3 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
4 Sobic.009G118900 expressed protein -
5 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
6 Sobic.003G334700 HEAT, putative, expressed K16803: CKAP5, cytoskeleton-associated protein 5
7 Sobic.004G174700 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
8 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
9 Sobic.001G437400 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
10 Sobic.007G145400 expressed protein -
11 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
12 Sobic.010G139500 phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
13 Sobic.001G533100 GHMP kinases ATP-binding protein, putative, expressed K05305: fucokinase
14 Sobic.003G293000 expressed protein -
15 Sobic.005G059500 expressed protein -
16 Sobic.002G119600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
17 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
18 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
19 Sobic.001G097900 expressed protein -
20 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -


Gene co-expression network
sample Sobic004G336300 Sobic004G336300 Sobic008G072200 Sobic008G072200 Sobic004G336300--Sobic008G072200 Sobic004G034300 Sobic004G034300 Sobic004G336300--Sobic004G034300 Sobic002G070600 Sobic002G070600 Sobic004G336300--Sobic002G070600 Sobic009G118900 Sobic009G118900 Sobic004G336300--Sobic009G118900 Sobic001G117800 Sobic001G117800 Sobic004G336300--Sobic001G117800 Sobic003G334700 Sobic003G334700 Sobic004G336300--Sobic003G334700 Sobic004G174700 Sobic004G174700 Sobic004G336300--Sobic004G174700 Sobic010G178600 Sobic010G178600 Sobic004G336300--Sobic010G178600 Sobic001G437400 Sobic001G437400 Sobic004G336300--Sobic001G437400 Sobic008G072200--Sobic002G070600 Sobic001G161700 Sobic001G161700 Sobic008G072200--Sobic001G161700 Sobic008G072200--Sobic004G336300 Sobic001G115700 Sobic001G115700 Sobic008G072200--Sobic001G115700 Sobic008G072200--Sobic001G117800 Sobic002G029300 Sobic002G029300 Sobic008G072200--Sobic002G029300 Sobic001G490500 Sobic001G490500 Sobic008G072200--Sobic001G490500 Sobic003G134800 Sobic003G134800 Sobic008G072200--Sobic003G134800 Sobic008G085700 Sobic008G085700 Sobic008G072200--Sobic008G085700 Sobic004G034300--Sobic004G336300 Sobic004G034300--Sobic010G178600 Sobic004G034300--Sobic002G070600 Sobic004G034300--Sobic008G072200 Sobic005G059500 Sobic005G059500 Sobic004G034300--Sobic005G059500 Sobic004G034300--Sobic009G118900 Sobic004G034300--Sobic003G334700 Sobic004G212100 Sobic004G212100 Sobic004G034300--Sobic004G212100 Sobic001G012900 Sobic001G012900 Sobic004G034300--Sobic001G012900 Sobic002G070600--Sobic008G072200 Sobic002G070600--Sobic001G117800 Sobic002G070600--Sobic001G161700 Sobic002G070600--Sobic008G085700 Sobic002G070600--Sobic004G336300 Sobic003G029600 Sobic003G029600 Sobic002G070600--Sobic003G029600 Sobic006G021700 Sobic006G021700 Sobic002G070600--Sobic006G021700 Sobic002G070600--Sobic009G118900 Sobic002G070600--Sobic010G178600 Sobic009G118900--Sobic001G117800 Sobic002G340900 Sobic002G340900 Sobic009G118900--Sobic002G340900 Sobic009G118900--Sobic001G437400 Sobic009G118900--Sobic010G178600 Sobic009G118900--Sobic003G029600 Sobic009G118900--Sobic002G070600 Sobic009G118900--Sobic004G174700 Sobic009G118900--Sobic004G336300 Sobic009G118900--Sobic003G334700 Sobic001G117800--Sobic003G029600 Sobic001G117800--Sobic002G070600 Sobic001G117800--Sobic009G118900 Sobic001G117800--Sobic002G340900 Sobic001G474400 Sobic001G474400 Sobic001G117800--Sobic001G474400 Sobic001G117800--Sobic008G072200 Sobic003G314700 Sobic003G314700 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G117800--Sobic001G437400 Sobic010G139500 Sobic010G139500 Sobic003G334700--Sobic010G139500 Sobic003G334700--Sobic001G437400 Sobic003G334700--Sobic003G314700 Sobic001G118000 Sobic001G118000 Sobic003G334700--Sobic001G118000 Sobic003G334700--Sobic005G059500 Sobic002G119600 Sobic002G119600 Sobic003G334700--Sobic002G119600 Sobic003G293000 Sobic003G293000 Sobic003G334700--Sobic003G293000 Sobic003G334700--Sobic004G336300 Sobic010G000800 Sobic010G000800 Sobic003G334700--Sobic010G000800 Sobic004G174700--Sobic010G178600 Sobic004G174700--Sobic009G118900 Sobic004G174700--Sobic004G336300 Sobic004G174700--Sobic004G034300 Sobic004G174700--Sobic002G070600 Sobic001G380600 Sobic001G380600 Sobic004G174700--Sobic001G380600 Sobic004G348600 Sobic004G348600 Sobic004G174700--Sobic004G348600 Sobic001G011000 Sobic001G011000 Sobic004G174700--Sobic001G011000 Sobic004G174700--Sobic004G212100 Sobic010G178600--Sobic004G174700 Sobic010G178600--Sobic009G118900 Sobic010G178600--Sobic004G034300 Sobic010G178600--Sobic002G070600 Sobic010G178600--Sobic008G072200 Sobic010G178600--Sobic003G134800 Sobic010G178600--Sobic004G336300 Sobic010G178600--Sobic001G117800 Sobic010G178600--Sobic003G029600 Sobic001G437400--Sobic002G340900 Sobic001G437400--Sobic003G314700 Sobic003G250900 Sobic003G250900 Sobic001G437400--Sobic003G250900 Sobic001G437400--Sobic009G118900 Sobic001G437400--Sobic003G029600 Sobic001G437400--Sobic001G117800 Sobic001G437400--Sobic003G334700 Sobic008G124800 Sobic008G124800 Sobic001G437400--Sobic008G124800 Sobic007G019300 Sobic007G019300 Sobic001G437400--Sobic007G019300
Octagon: transcription factors


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