Gene annotation
Transcriptome id Sobic.001G437400.1
Synonym Sb01g041140
Functional annotation guanine nucleotide exchange family protein, putative, expressed
UniProt C5WQY7
Pfam PF16206 PF16213 PF09324 PF12783 PF01369
Panther DB PTHR10663 PTHR10663:SF42
NCBI CDD -
KEGG Orthology K18442; ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
Gene Ontology GO:0005086; ARF guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT3G60860 : SEC7-like guanine nucleotide exchange family protein
RAP-DB (Rice) LOC_Os03g14260.1 : guanine nucleotide exchange family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001605
Brachypodium KQK22582
Barley HORVU4Hr1G063180.1 , HORVU4Hr1G063180.2
Wheat TraesCS4B02G224700 , TraesCS4A02G067400 , TraesCS4D02G225300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
2 Sobic.003G314700 expressed protein -
3 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
4 Sobic.009G118900 expressed protein -
5 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
6 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
7 Sobic.003G334700 HEAT, putative, expressed K16803: CKAP5, cytoskeleton-associated protein 5
8 Sobic.008G124800 expressed protein -
9 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
10 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
11 Sobic.008G092800 expressed protein -
12 Sobic.007G145400 expressed protein -
13 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
14 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
15 Sobic.003G195900 SCD1, putative, expressed -
16 Sobic.002G150800 WD domain, G-beta repeat domain containing protein, expressed K16547: protein NEDD1
17 Sobic.003G293000 expressed protein -
18 Sobic.004G034300 transducin family protein, putative, expressed -
19 Sobic.005G059500 expressed protein -
20 Sobic.004G204100 expressed protein -


Gene co-expression network
sample Sobic001G437400 Sobic001G437400 Sobic002G340900 Sobic002G340900 Sobic001G437400--Sobic002G340900 Sobic003G314700 Sobic003G314700 Sobic001G437400--Sobic003G314700 Sobic003G250900 Sobic003G250900 Sobic001G437400--Sobic003G250900 Sobic009G118900 Sobic009G118900 Sobic001G437400--Sobic009G118900 Sobic003G029600 Sobic003G029600 Sobic001G437400--Sobic003G029600 Sobic001G117800 Sobic001G117800 Sobic001G437400--Sobic001G117800 Sobic003G334700 Sobic003G334700 Sobic001G437400--Sobic003G334700 Sobic008G124800 Sobic008G124800 Sobic001G437400--Sobic008G124800 Sobic007G019300 Sobic007G019300 Sobic001G437400--Sobic007G019300 Sobic002G340900--Sobic008G124800 Sobic002G340900--Sobic001G437400 Sobic006G021700 Sobic006G021700 Sobic002G340900--Sobic006G021700 Sobic004G053500 Sobic004G053500 Sobic002G340900--Sobic004G053500 Sobic002G340900--Sobic001G117800 Sobic002G340900--Sobic009G118900 Sobic002G340900--Sobic003G029600 Sobic004G223300 Sobic004G223300 Sobic002G340900--Sobic004G223300 Sobic001G474400 Sobic001G474400 Sobic002G340900--Sobic001G474400 Sobic003G314700--Sobic003G029600 Sobic003G314700--Sobic008G124800 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G405500 Sobic003G405500 Sobic003G314700--Sobic003G405500 Sobic003G314700--Sobic007G019300 Sobic004G204100 Sobic004G204100 Sobic003G314700--Sobic004G204100 Sobic001G426600 Sobic001G426600 Sobic003G314700--Sobic001G426600 Sobic002G412700 Sobic002G412700 Sobic003G314700--Sobic002G412700 Sobic003G250900--Sobic001G437400 Sobic002G150800 Sobic002G150800 Sobic003G250900--Sobic002G150800 Sobic001G143600 Sobic001G143600 Sobic003G250900--Sobic001G143600 Sobic003G250900--Sobic003G314700 Sobic010G138900 Sobic010G138900 Sobic003G250900--Sobic010G138900 Sobic009G049200 Sobic009G049200 Sobic003G250900--Sobic009G049200 Sobic006G265600 Sobic006G265600 Sobic003G250900--Sobic006G265600 Sobic002G051800 Sobic002G051800 Sobic003G250900--Sobic002G051800 Sobic006G280100 Sobic006G280100 Sobic003G250900--Sobic006G280100 Sobic009G118900--Sobic001G117800 Sobic009G118900--Sobic002G340900 Sobic009G118900--Sobic001G437400 Sobic010G178600 Sobic010G178600 Sobic009G118900--Sobic010G178600 Sobic009G118900--Sobic003G029600 Sobic002G070600 Sobic002G070600 Sobic009G118900--Sobic002G070600 Sobic004G174700 Sobic004G174700 Sobic009G118900--Sobic004G174700 Sobic004G336300 Sobic004G336300 Sobic009G118900--Sobic004G336300 Sobic009G118900--Sobic003G334700 Sobic003G029600--Sobic001G117800 Sobic003G029600--Sobic003G314700 Sobic003G029600--Sobic002G070600 Sobic003G029600--Sobic002G340900 Sobic001G301200 Sobic001G301200 Sobic003G029600--Sobic001G301200 Sobic001G449900 Sobic001G449900 Sobic003G029600--Sobic001G449900 Sobic003G029600--Sobic008G124800 Sobic003G029600--Sobic009G118900 Sobic003G029600--Sobic001G437400 Sobic001G117800--Sobic003G029600 Sobic001G117800--Sobic002G070600 Sobic001G117800--Sobic009G118900 Sobic001G117800--Sobic002G340900 Sobic001G117800--Sobic001G474400 Sobic008G072200 Sobic008G072200 Sobic001G117800--Sobic008G072200 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G117800--Sobic001G437400 Sobic010G139500 Sobic010G139500 Sobic003G334700--Sobic010G139500 Sobic003G334700--Sobic001G437400 Sobic003G334700--Sobic003G314700 Sobic001G118000 Sobic001G118000 Sobic003G334700--Sobic001G118000 Sobic005G059500 Sobic005G059500 Sobic003G334700--Sobic005G059500 Sobic002G119600 Sobic002G119600 Sobic003G334700--Sobic002G119600 Sobic003G293000 Sobic003G293000 Sobic003G334700--Sobic003G293000 Sobic003G334700--Sobic004G336300 Sobic010G000800 Sobic010G000800 Sobic003G334700--Sobic010G000800 Sobic008G124800--Sobic002G340900 Sobic008G124800--Sobic006G021700 Sobic008G124800--Sobic007G019300 Sobic004G322400 Sobic004G322400 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic003G233400 Sobic003G233400 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic003G312100 Sobic003G312100 Sobic007G019300--Sobic003G312100 Sobic007G019300--Sobic008G124800 Sobic007G019300--Sobic003G233400 Sobic007G019300--Sobic001G426600 Sobic007G019300--Sobic003G314700 Sobic001G170100 Sobic001G170100 Sobic007G019300--Sobic001G170100 Sobic010G147833 Sobic010G147833 Sobic007G019300--Sobic010G147833 Sobic004G260100 Sobic004G260100 Sobic007G019300--Sobic004G260100 Sobic009G084900 Sobic009G084900 Sobic007G019300--Sobic009G084900
Octagon: transcription factors


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