Gene annotation
Transcriptome id Sobic.002G150800.1
Synonym Sb02g018310, NEDD1
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1W0W452
Pfam -
Panther DB PTHR22847
NCBI CDD KOG4378; Nuclear protein COP1
KEGG Orthology K16547; protein NEDD1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05970 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os09g09470.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013434
Brachypodium KQJ89643 , KQJ89645 , KQJ89644
Barley HORVU5Hr1G052660.20 , HORVU5Hr1G052660.1 , HORVU5Hr1G052660.2 , HORVU5Hr1G052660.3 , HORVU5Hr1G052660.4 , HORVU5Hr1G052660.5 , HORVU5Hr1G052660.6 , HORVU5Hr1G052660.7 , HORVU5Hr1G052660.8 , HORVU5Hr1G052660.9 , HORVU5Hr1G052660.18 , HORVU5Hr1G052660.19 , HORVU5Hr1G052660.12 , HORVU5Hr1G052660.13 , HORVU5Hr1G052660.10 , HORVU5Hr1G052660.11 , HORVU5Hr1G052660.16 , HORVU5Hr1G052660.17 , HORVU5Hr1G052660.14 , HORVU5Hr1G052660.15
Wheat TraesCS5D02G176100 , TraesCS5A02G171300 , TraesCS5B02G168800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
2 Sobic.001G437400 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
3 Sobic.001G151600 OsRhmbd9 - Putative Rhomboid homologue, expressed -
4 Sobic.009G118900 expressed protein -
5 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
6 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
7 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
8 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
9 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
10 Sobic.001G118200 CASP, putative, expressed K09313: homeobox protein cut-like
11 Sobic.008G092800 expressed protein -
12 Sobic.009G176700 expressed protein -
13 Sobic.002G119600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
14 Sobic.002G051800 BTBT2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
15 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
16 Sobic.002G075900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed K12670: oligosaccharyltransferase complex subunit beta
17 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
18 Sobic.008G091300 PolI-like DNA polymerase, putative, expressed K02349: DNA polymerase theta
19 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
20 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase


Gene co-expression network
sample Sobic002G150800 Sobic002G150800 Sobic003G250900 Sobic003G250900 Sobic002G150800--Sobic003G250900 Sobic001G437400 Sobic001G437400 Sobic002G150800--Sobic001G437400 Sobic001G151600 Sobic001G151600 Sobic002G150800--Sobic001G151600 Sobic009G118900 Sobic009G118900 Sobic002G150800--Sobic009G118900 Sobic002G160700 Sobic002G160700 Sobic002G150800--Sobic002G160700 Sobic003G029600 Sobic003G029600 Sobic002G150800--Sobic003G029600 Sobic001G117800 Sobic001G117800 Sobic002G150800--Sobic001G117800 Sobic009G049200 Sobic009G049200 Sobic002G150800--Sobic009G049200 Sobic002G340900 Sobic002G340900 Sobic002G150800--Sobic002G340900 Sobic003G250900--Sobic001G437400 Sobic003G250900--Sobic002G150800 Sobic001G143600 Sobic001G143600 Sobic003G250900--Sobic001G143600 Sobic003G314700 Sobic003G314700 Sobic003G250900--Sobic003G314700 Sobic010G138900 Sobic010G138900 Sobic003G250900--Sobic010G138900 Sobic003G250900--Sobic009G049200 Sobic006G265600 Sobic006G265600 Sobic003G250900--Sobic006G265600 Sobic002G051800 Sobic002G051800 Sobic003G250900--Sobic002G051800 Sobic006G280100 Sobic006G280100 Sobic003G250900--Sobic006G280100 Sobic001G437400--Sobic002G340900 Sobic001G437400--Sobic003G314700 Sobic001G437400--Sobic003G250900 Sobic001G437400--Sobic009G118900 Sobic001G437400--Sobic003G029600 Sobic001G437400--Sobic001G117800 Sobic003G334700 Sobic003G334700 Sobic001G437400--Sobic003G334700 Sobic008G124800 Sobic008G124800 Sobic001G437400--Sobic008G124800 Sobic007G019300 Sobic007G019300 Sobic001G437400--Sobic007G019300 Sobic001G151600--Sobic002G160700 Sobic003G397900 Sobic003G397900 Sobic001G151600--Sobic003G397900 Sobic001G151600--Sobic006G265600 Sobic001G474400 Sobic001G474400 Sobic001G151600--Sobic001G474400 Sobic002G070600 Sobic002G070600 Sobic001G151600--Sobic002G070600 Sobic009G003700 Sobic009G003700 Sobic001G151600--Sobic009G003700 Sobic004G151200 Sobic004G151200 Sobic001G151600--Sobic004G151200 Sobic002G199400 Sobic002G199400 Sobic001G151600--Sobic002G199400 Sobic001G151600--Sobic001G117800 Sobic009G118900--Sobic001G117800 Sobic009G118900--Sobic002G340900 Sobic009G118900--Sobic001G437400 Sobic010G178600 Sobic010G178600 Sobic009G118900--Sobic010G178600 Sobic009G118900--Sobic003G029600 Sobic009G118900--Sobic002G070600 Sobic004G174700 Sobic004G174700 Sobic009G118900--Sobic004G174700 Sobic004G336300 Sobic004G336300 Sobic009G118900--Sobic004G336300 Sobic009G118900--Sobic003G334700 Sobic002G160700--Sobic001G151600 Sobic002G371600 Sobic002G371600 Sobic002G160700--Sobic002G371600 Sobic006G029100 Sobic006G029100 Sobic002G160700--Sobic006G029100 Sobic001G248100 Sobic001G248100 Sobic002G160700--Sobic001G248100 Sobic002G160700--Sobic006G265600 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic004G030400 Sobic004G030400 Sobic002G160700--Sobic004G030400 Sobic005G115500 Sobic005G115500 Sobic002G160700--Sobic005G115500 Sobic003G029600--Sobic001G117800 Sobic003G029600--Sobic003G314700 Sobic003G029600--Sobic002G070600 Sobic003G029600--Sobic002G340900 Sobic001G301200 Sobic001G301200 Sobic003G029600--Sobic001G301200 Sobic001G449900 Sobic001G449900 Sobic003G029600--Sobic001G449900 Sobic003G029600--Sobic008G124800 Sobic003G029600--Sobic009G118900 Sobic003G029600--Sobic001G437400 Sobic001G117800--Sobic003G029600 Sobic001G117800--Sobic002G070600 Sobic001G117800--Sobic009G118900 Sobic001G117800--Sobic002G340900 Sobic001G117800--Sobic001G474400 Sobic008G072200 Sobic008G072200 Sobic001G117800--Sobic008G072200 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G117800--Sobic001G437400 Sobic009G052100 Sobic009G052100 Sobic009G049200--Sobic009G052100 Sobic001G507200 Sobic001G507200 Sobic009G049200--Sobic001G507200 Sobic009G049200--Sobic001G143600 Sobic009G049200--Sobic003G250900 Sobic010G250800 Sobic010G250800 Sobic009G049200--Sobic010G250800 Sobic004G231200 Sobic004G231200 Sobic009G049200--Sobic004G231200 Sobic004G307900 Sobic004G307900 Sobic009G049200--Sobic004G307900 Sobic003G423600 Sobic003G423600 Sobic009G049200--Sobic003G423600 Sobic008G015200 Sobic008G015200 Sobic009G049200--Sobic008G015200 Sobic002G340900--Sobic008G124800 Sobic002G340900--Sobic001G437400 Sobic006G021700 Sobic006G021700 Sobic002G340900--Sobic006G021700 Sobic004G053500 Sobic004G053500 Sobic002G340900--Sobic004G053500 Sobic002G340900--Sobic001G117800 Sobic002G340900--Sobic009G118900 Sobic002G340900--Sobic003G029600 Sobic004G223300 Sobic004G223300 Sobic002G340900--Sobic004G223300 Sobic002G340900--Sobic001G474400
Octagon: transcription factors


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