Gene annotation
Transcriptome id Sobic.001G118200.1
Synonym CASP, AtCASP, Sb01g010430
Functional annotation CASP, putative, expressed
UniProt C5WN44
Pfam PF08172
Panther DB PTHR14043
NCBI CDD -
KEGG Orthology K09313; homeobox protein cut-like
Gene Ontology GO:0006891; intra-Golgi vesicle-mediated transport


Orthologs (automatic annotation)
TAIR AT3G18480 : CCAAT-displacement protein alternatively spliced product
RAP-DB (Rice) LOC_Os03g50300.1 : CASP, putative, expressed
MaizeGDB (Corn) Zm00025a017004
Brachypodium KQK13610
Barley HORVU0Hr1G032830.2 , HORVU0Hr1G032830.3 , HORVU0Hr1G032830.1 , HORVU4Hr1G007400.2 , HORVU4Hr1G007400.1
Wheat TraesCS4A02G268600 , TraesCS4D02G046300 , TraesCS4D02G046300 , TraesCS4B02G045600 , TraesCS4B02G045600
Populus -


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cDNA sequences
Sobic.001G118200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G382600 expressed protein -
2 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
3 Sobic.010G000800 PHD-finger domain containing protein, expressed -
4 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
5 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
6 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
7 Sobic.008G124800 expressed protein -
8 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
9 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
10 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
11 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
12 Sobic.002G179400 DNA binding protein, putative, expressed -
13 Sobic.007G145400 expressed protein -
14 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
15 Sobic.003G050900 dolichyl-P-Man Man-PP-dolichyl mannosyltransferase, putative, expressed K03845: alpha-1,3-mannosyltransferase
16 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
17 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
18 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
19 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
20 Sobic.009G231700 GTP binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G118200 Sobic001G118200 Sobic001G382600 Sobic001G382600 Sobic001G118200--Sobic001G382600 Sobic002G020700 Sobic002G020700 Sobic001G118200--Sobic002G020700 Sobic010G000800 Sobic010G000800 Sobic001G118200--Sobic010G000800 Sobic009G003700 Sobic009G003700 Sobic001G118200--Sobic009G003700 Sobic004G053500 Sobic004G053500 Sobic001G118200--Sobic004G053500 Sobic004G223300 Sobic004G223300 Sobic001G118200--Sobic004G223300 Sobic008G124800 Sobic008G124800 Sobic001G118200--Sobic008G124800 Sobic001G117800 Sobic001G117800 Sobic001G118200--Sobic001G117800 Sobic002G340900 Sobic002G340900 Sobic001G118200--Sobic002G340900 Sobic002G299000 Sobic002G299000 Sobic001G382600--Sobic002G299000 Sobic002G008800 Sobic002G008800 Sobic001G382600--Sobic002G008800 Sobic001G065100 Sobic001G065100 Sobic001G382600--Sobic001G065100 Sobic001G382600--Sobic001G118200 Sobic002G111600 Sobic002G111600 Sobic001G382600--Sobic002G111600 Sobic003G337300 Sobic003G337300 Sobic001G382600--Sobic003G337300 Sobic001G382600--Sobic002G020700 Sobic008G055900 Sobic008G055900 Sobic001G382600--Sobic008G055900 Sobic006G131000 Sobic006G131000 Sobic001G382600--Sobic006G131000 Sobic010G020400 Sobic010G020400 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic002G020700--Sobic008G055900 Sobic001G333100 Sobic001G333100 Sobic002G020700--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic007G054800 Sobic007G054800 Sobic002G020700--Sobic007G054800 Sobic004G265500 Sobic004G265500 Sobic010G000800--Sobic004G265500 Sobic004G322400 Sobic004G322400 Sobic010G000800--Sobic004G322400 Sobic003G163200 Sobic003G163200 Sobic010G000800--Sobic003G163200 Sobic003G379200 Sobic003G379200 Sobic010G000800--Sobic003G379200 Sobic003G189600 Sobic003G189600 Sobic010G000800--Sobic003G189600 Sobic002G179400 Sobic002G179400 Sobic010G000800--Sobic002G179400 Sobic006G077200 Sobic006G077200 Sobic010G000800--Sobic006G077200 Sobic006G261400 Sobic006G261400 Sobic010G000800--Sobic006G261400 Sobic002G429300 Sobic002G429300 Sobic010G000800--Sobic002G429300 Sobic007G145400 Sobic007G145400 Sobic009G003700--Sobic007G145400 Sobic003G050900 Sobic003G050900 Sobic009G003700--Sobic003G050900 Sobic001G248100 Sobic001G248100 Sobic009G003700--Sobic001G248100 Sobic001G097500 Sobic001G097500 Sobic009G003700--Sobic001G097500 Sobic009G003700--Sobic001G118200 Sobic005G110499 Sobic005G110499 Sobic009G003700--Sobic005G110499 Sobic009G003700--Sobic004G053500 Sobic004G147500 Sobic004G147500 Sobic009G003700--Sobic004G147500 Sobic009G003700--Sobic002G340900 Sobic002G401500 Sobic002G401500 Sobic004G053500--Sobic002G401500 Sobic004G053500--Sobic002G179400 Sobic002G335600 Sobic002G335600 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic005G162500 Sobic005G162500 Sobic004G053500--Sobic005G162500 Sobic004G223300--Sobic004G147500 Sobic004G223300--Sobic002G340900 Sobic004G223300--Sobic001G065100 Sobic002G042600 Sobic002G042600 Sobic004G223300--Sobic002G042600 Sobic004G223300--Sobic008G124800 Sobic005G062200 Sobic005G062200 Sobic004G223300--Sobic005G062200 Sobic003G039000 Sobic003G039000 Sobic004G223300--Sobic003G039000 Sobic004G223300--Sobic001G382600 Sobic004G223300--Sobic002G401500 Sobic008G124800--Sobic002G340900 Sobic006G021700 Sobic006G021700 Sobic008G124800--Sobic006G021700 Sobic007G019300 Sobic007G019300 Sobic008G124800--Sobic007G019300 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic003G233400 Sobic003G233400 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic003G405500 Sobic003G405500 Sobic008G124800--Sobic003G405500 Sobic008G124800--Sobic002G401500 Sobic003G029600 Sobic003G029600 Sobic001G117800--Sobic003G029600 Sobic002G070600 Sobic002G070600 Sobic001G117800--Sobic002G070600 Sobic009G118900 Sobic009G118900 Sobic001G117800--Sobic009G118900 Sobic001G117800--Sobic002G340900 Sobic001G474400 Sobic001G474400 Sobic001G117800--Sobic001G474400 Sobic008G072200 Sobic008G072200 Sobic001G117800--Sobic008G072200 Sobic003G314700 Sobic003G314700 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G437400 Sobic001G437400 Sobic001G117800--Sobic001G437400 Sobic002G340900--Sobic008G124800 Sobic002G340900--Sobic001G437400 Sobic002G340900--Sobic006G021700 Sobic002G340900--Sobic004G053500 Sobic002G340900--Sobic001G117800 Sobic002G340900--Sobic009G118900 Sobic002G340900--Sobic003G029600 Sobic002G340900--Sobic004G223300 Sobic002G340900--Sobic001G474400
Octagon: transcription factors


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