Gene annotation
Transcriptome id Sobic.004G223300.2
Synonym AGD2
Functional annotation ARF GTPase-activating domain-containing protein, putative, expressed
UniProt A0A1Z5RP79
Pfam PF12796 PF00169 PF03114 PF01412
Panther DB PTHR23180 PTHR23180:SF244
NCBI CDD -
KEGG Orthology K12489; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
Gene Ontology GO:0005737; cytoplasm GO:0005515protein binding GO:0005096GTPase activator activity


Orthologs (automatic annotation)
TAIR AT1G60860 : ARF-GAP domain 2
RAP-DB (Rice) LOC_Os02g42134.2 : ARF GTPase-activating domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032064
Brachypodium PNT69108 , PNT69109
Barley HORVU6Hr1G059210.22 , HORVU6Hr1G059210.20 , HORVU6Hr1G059210.21 , HORVU6Hr1G059210.3 , HORVU6Hr1G059210.2 , HORVU6Hr1G059210.1 , HORVU6Hr1G059210.7 , HORVU6Hr1G059210.6 , HORVU6Hr1G059210.5 , HORVU6Hr1G059210.4 , HORVU6Hr1G059210.9 , HORVU6Hr1G059210.8 , HORVU6Hr1G059210.13 , HORVU6Hr1G059210.12 , HORVU6Hr1G059210.11 , HORVU6Hr1G059210.10 , HORVU6Hr1G059210.17 , HORVU6Hr1G059210.16 , HORVU6Hr1G059210.15 , HORVU6Hr1G059210.14 , HORVU6Hr1G059210.19 , HORVU6Hr1G059210.18
Wheat TraesCS6B02G259800 , TraesCS6B02G259800 , TraesCS6D02G213800 , TraesCS6A02G221400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G147500 tetratricopeptide repeat domain containing protein, expressed K09667: protein O-GlcNAc transferase
2 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
3 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
4 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
5 Sobic.008G124800 expressed protein -
6 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
7 Sobic.003G039000 GPI transamidase component Gpi16 subunit family protein, putative, expressed K05292: GPI-anchor transamidase subunit T
8 Sobic.001G382600 expressed protein -
9 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
10 Sobic.001G118200 CASP, putative, expressed K09313: homeobox protein cut-like
11 Sobic.002G405500 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11841: USP10, ubiquitin carboxyl-terminal hydrolase 10
12 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -
13 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
14 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
15 Sobic.004G135400 expressed protein -
16 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
17 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
18 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
19 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
20 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G223300 Sobic004G223300 Sobic004G147500 Sobic004G147500 Sobic004G223300--Sobic004G147500 Sobic002G340900 Sobic002G340900 Sobic004G223300--Sobic002G340900 Sobic001G065100 Sobic001G065100 Sobic004G223300--Sobic001G065100 Sobic002G042600 Sobic002G042600 Sobic004G223300--Sobic002G042600 Sobic008G124800 Sobic008G124800 Sobic004G223300--Sobic008G124800 Sobic005G062200 Sobic005G062200 Sobic004G223300--Sobic005G062200 Sobic003G039000 Sobic003G039000 Sobic004G223300--Sobic003G039000 Sobic001G382600 Sobic001G382600 Sobic004G223300--Sobic001G382600 Sobic002G401500 Sobic002G401500 Sobic004G223300--Sobic002G401500 Sobic004G147500--Sobic004G223300 Sobic004G147500--Sobic002G042600 Sobic004G147500--Sobic005G062200 Sobic003G209200 Sobic003G209200 Sobic004G147500--Sobic003G209200 Sobic004G147500--Sobic002G340900 Sobic009G003700 Sobic009G003700 Sobic004G147500--Sobic009G003700 Sobic001G014300 Sobic001G014300 Sobic004G147500--Sobic001G014300 Sobic004G053500 Sobic004G053500 Sobic004G147500--Sobic004G053500 Sobic006G166200 Sobic006G166200 Sobic004G147500--Sobic006G166200 Sobic002G340900--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic002G340900--Sobic001G437400 Sobic006G021700 Sobic006G021700 Sobic002G340900--Sobic006G021700 Sobic002G340900--Sobic004G053500 Sobic001G117800 Sobic001G117800 Sobic002G340900--Sobic001G117800 Sobic009G118900 Sobic009G118900 Sobic002G340900--Sobic009G118900 Sobic003G029600 Sobic003G029600 Sobic002G340900--Sobic003G029600 Sobic002G340900--Sobic004G223300 Sobic001G474400 Sobic001G474400 Sobic002G340900--Sobic001G474400 Sobic001G065100--Sobic002G042600 Sobic002G179400 Sobic002G179400 Sobic001G065100--Sobic002G179400 Sobic001G263600 Sobic001G263600 Sobic001G065100--Sobic001G263600 Sobic001G065100--Sobic002G401500 Sobic001G493700 Sobic001G493700 Sobic001G065100--Sobic001G493700 Sobic008G088872 Sobic008G088872 Sobic001G065100--Sobic008G088872 Sobic004G322400 Sobic004G322400 Sobic001G065100--Sobic004G322400 Sobic001G065100--Sobic005G062200 Sobic003G296900 Sobic003G296900 Sobic001G065100--Sobic003G296900 Sobic002G042600--Sobic001G065100 Sobic006G184900 Sobic006G184900 Sobic002G042600--Sobic006G184900 Sobic008G098900 Sobic008G098900 Sobic002G042600--Sobic008G098900 Sobic002G042600--Sobic002G401500 Sobic002G042600--Sobic002G179400 Sobic002G042600--Sobic004G322400 Sobic002G429300 Sobic002G429300 Sobic002G042600--Sobic002G429300 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic008G124800--Sobic002G340900 Sobic008G124800--Sobic006G021700 Sobic007G019300 Sobic007G019300 Sobic008G124800--Sobic007G019300 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic003G233400 Sobic003G233400 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic003G405500 Sobic003G405500 Sobic008G124800--Sobic003G405500 Sobic008G124800--Sobic002G401500 Sobic005G062200--Sobic008G088872 Sobic005G062200--Sobic001G263600 Sobic005G062200--Sobic002G401500 Sobic005G062200--Sobic006G184900 Sobic005G062200--Sobic002G042600 Sobic005G062200--Sobic003G209200 Sobic003G114400 Sobic003G114400 Sobic005G062200--Sobic003G114400 Sobic005G062200--Sobic001G065100 Sobic002G335600 Sobic002G335600 Sobic005G062200--Sobic002G335600 Sobic001G255800 Sobic001G255800 Sobic003G039000--Sobic001G255800 Sobic003G039000--Sobic001G065100 Sobic004G131300 Sobic004G131300 Sobic003G039000--Sobic004G131300 Sobic003G146600 Sobic003G146600 Sobic003G039000--Sobic003G146600 Sobic003G375200 Sobic003G375200 Sobic003G039000--Sobic003G375200 Sobic003G039000--Sobic004G223300 Sobic010G080700 Sobic010G080700 Sobic003G039000--Sobic010G080700 Sobic003G039000--Sobic005G062200 Sobic003G039000--Sobic002G179400 Sobic002G299000 Sobic002G299000 Sobic001G382600--Sobic002G299000 Sobic002G008800 Sobic002G008800 Sobic001G382600--Sobic002G008800 Sobic001G382600--Sobic001G065100 Sobic001G118200 Sobic001G118200 Sobic001G382600--Sobic001G118200 Sobic002G111600 Sobic002G111600 Sobic001G382600--Sobic002G111600 Sobic003G337300 Sobic003G337300 Sobic001G382600--Sobic003G337300 Sobic002G020700 Sobic002G020700 Sobic001G382600--Sobic002G020700 Sobic008G055900 Sobic008G055900 Sobic001G382600--Sobic008G055900 Sobic006G131000 Sobic006G131000 Sobic001G382600--Sobic006G131000 Sobic002G401500--Sobic004G322400 Sobic009G131300 Sobic009G131300 Sobic002G401500--Sobic009G131300 Sobic002G401500--Sobic002G042600 Sobic002G401500--Sobic004G053500 Sobic002G401500--Sobic005G062200 Sobic002G401500--Sobic002G429300 Sobic002G401500--Sobic001G065100 Sobic002G401500--Sobic008G088872 Sobic002G401500--Sobic001G263600
Octagon: transcription factors


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