Gene annotation
Transcriptome id Sobic.004G147500.1,Sobic.004G147500.2
Synonym SEC, Sb04g019560
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5XRT8
Pfam PF13414 PF13844
Panther DB PTHR23083 PTHR23083:SF364
NCBI CDD -
KEGG Orthology K09667; protein O-GlcNAc transferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04240 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g68680.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020342
Brachypodium KQJ99507 , PNT60844 , KQJ82145 , KQJ82146
Barley HORVU2Hr1G067320.10 , HORVU2Hr1G067320.11 , HORVU2Hr1G067320.12 , HORVU2Hr1G067320.13 , HORVU2Hr1G067320.14 , HORVU2Hr1G067320.15 , HORVU2Hr1G067320.16 , HORVU2Hr1G067320.17 , HORVU2Hr1G067320.18 , HORVU2Hr1G067320.19 , HORVU2Hr1G067320.25 , HORVU2Hr1G067320.24 , HORVU2Hr1G067320.27 , HORVU2Hr1G067320.21 , HORVU2Hr1G067320.20 , HORVU2Hr1G067320.23 , HORVU2Hr1G067320.22 , HORVU2Hr1G067320.29 , HORVU2Hr1G067320.28 , HORVU2Hr1G067320.26 , HORVU2Hr1G067320.3 , HORVU2Hr1G067320.30 , HORVU2Hr1G067320.2 , HORVU2Hr1G067320.1 , HORVU2Hr1G067320.7 , HORVU2Hr1G067320.4 , HORVU2Hr1G067320.5 , HORVU2Hr1G067320.8 , HORVU2Hr1G067320.9
Wheat TraesCS2A02G275800 , TraesCS2A02G275800 , TraesCS2D02G274800 , TraesCS2D02G274800 , TraesCS2B02G293500 , TraesCS2B02G293500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
2 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
3 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
4 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
5 Sobic.002G340900 ATMIN7, putative, expressed K13462: guanine nucleotide-exchange factor
6 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
7 Sobic.001G014300 OsFBDUF15 - F-box and DUF domain containing protein, expressed -
8 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
9 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
10 Sobic.005G110499 - K14006: protein transport protein SEC23
11 Sobic.008G099800 expressed protein -
12 Sobic.006G224800 expressed protein -
13 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
14 Sobic.003G227100 adaptin, putative, expressed -
15 Sobic.008G124800 expressed protein -
16 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
17 Sobic.001G542450 - -
18 Sobic.003G284000 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
19 Sobic.002G241600 - -
20 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin


Gene co-expression network
sample Sobic004G147500 Sobic004G147500 Sobic004G223300 Sobic004G223300 Sobic004G147500--Sobic004G223300 Sobic002G042600 Sobic002G042600 Sobic004G147500--Sobic002G042600 Sobic005G062200 Sobic005G062200 Sobic004G147500--Sobic005G062200 Sobic003G209200 Sobic003G209200 Sobic004G147500--Sobic003G209200 Sobic002G340900 Sobic002G340900 Sobic004G147500--Sobic002G340900 Sobic009G003700 Sobic009G003700 Sobic004G147500--Sobic009G003700 Sobic001G014300 Sobic001G014300 Sobic004G147500--Sobic001G014300 Sobic004G053500 Sobic004G053500 Sobic004G147500--Sobic004G053500 Sobic006G166200 Sobic006G166200 Sobic004G147500--Sobic006G166200 Sobic004G223300--Sobic004G147500 Sobic004G223300--Sobic002G340900 Sobic001G065100 Sobic001G065100 Sobic004G223300--Sobic001G065100 Sobic004G223300--Sobic002G042600 Sobic008G124800 Sobic008G124800 Sobic004G223300--Sobic008G124800 Sobic004G223300--Sobic005G062200 Sobic003G039000 Sobic003G039000 Sobic004G223300--Sobic003G039000 Sobic001G382600 Sobic001G382600 Sobic004G223300--Sobic001G382600 Sobic002G401500 Sobic002G401500 Sobic004G223300--Sobic002G401500 Sobic002G042600--Sobic001G065100 Sobic006G184900 Sobic006G184900 Sobic002G042600--Sobic006G184900 Sobic008G098900 Sobic008G098900 Sobic002G042600--Sobic008G098900 Sobic002G042600--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic002G042600--Sobic002G179400 Sobic004G322400 Sobic004G322400 Sobic002G042600--Sobic004G322400 Sobic002G429300 Sobic002G429300 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic005G062200--Sobic008G088872 Sobic001G263600 Sobic001G263600 Sobic005G062200--Sobic001G263600 Sobic005G062200--Sobic002G401500 Sobic005G062200--Sobic006G184900 Sobic005G062200--Sobic002G042600 Sobic005G062200--Sobic003G209200 Sobic003G114400 Sobic003G114400 Sobic005G062200--Sobic003G114400 Sobic005G062200--Sobic001G065100 Sobic002G335600 Sobic002G335600 Sobic005G062200--Sobic002G335600 Sobic007G005500 Sobic007G005500 Sobic003G209200--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic003G209200--Sobic006G260500 Sobic006G077300 Sobic006G077300 Sobic003G209200--Sobic006G077300 Sobic006G021700 Sobic006G021700 Sobic003G209200--Sobic006G021700 Sobic003G209200--Sobic005G062200 Sobic004G241900 Sobic004G241900 Sobic003G209200--Sobic004G241900 Sobic004G261600 Sobic004G261600 Sobic003G209200--Sobic004G261600 Sobic005G110499 Sobic005G110499 Sobic003G209200--Sobic005G110499 Sobic009G077600 Sobic009G077600 Sobic003G209200--Sobic009G077600 Sobic002G340900--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic002G340900--Sobic001G437400 Sobic002G340900--Sobic006G021700 Sobic002G340900--Sobic004G053500 Sobic001G117800 Sobic001G117800 Sobic002G340900--Sobic001G117800 Sobic009G118900 Sobic009G118900 Sobic002G340900--Sobic009G118900 Sobic003G029600 Sobic003G029600 Sobic002G340900--Sobic003G029600 Sobic002G340900--Sobic004G223300 Sobic001G474400 Sobic001G474400 Sobic002G340900--Sobic001G474400 Sobic007G145400 Sobic007G145400 Sobic009G003700--Sobic007G145400 Sobic003G050900 Sobic003G050900 Sobic009G003700--Sobic003G050900 Sobic001G248100 Sobic001G248100 Sobic009G003700--Sobic001G248100 Sobic001G097500 Sobic001G097500 Sobic009G003700--Sobic001G097500 Sobic001G118200 Sobic001G118200 Sobic009G003700--Sobic001G118200 Sobic009G003700--Sobic005G110499 Sobic009G003700--Sobic004G053500 Sobic009G003700--Sobic004G147500 Sobic009G003700--Sobic002G340900 Sobic008G054600 Sobic008G054600 Sobic001G014300--Sobic008G054600 Sobic003G312700 Sobic003G312700 Sobic001G014300--Sobic003G312700 Sobic002G051750 Sobic002G051750 Sobic001G014300--Sobic002G051750 Sobic004G096400 Sobic004G096400 Sobic001G014300--Sobic004G096400 Sobic004G265500 Sobic004G265500 Sobic001G014300--Sobic004G265500 Sobic006G080400 Sobic006G080400 Sobic001G014300--Sobic006G080400 Sobic003G163200 Sobic003G163200 Sobic001G014300--Sobic003G163200 Sobic002G154000 Sobic002G154000 Sobic001G014300--Sobic002G154000 Sobic006G240100 Sobic006G240100 Sobic001G014300--Sobic006G240100 Sobic004G053500--Sobic002G401500 Sobic004G053500--Sobic002G179400 Sobic004G053500--Sobic002G335600 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic005G162500 Sobic005G162500 Sobic004G053500--Sobic005G162500 Sobic006G166200--Sobic005G133800 Sobic006G166200--Sobic004G053500 Sobic006G166200--Sobic008G124800 Sobic003G405500 Sobic003G405500 Sobic006G166200--Sobic003G405500 Sobic006G224800 Sobic006G224800 Sobic006G166200--Sobic006G224800 Sobic001G145400 Sobic001G145400 Sobic006G166200--Sobic001G145400 Sobic010G059500 Sobic010G059500 Sobic006G166200--Sobic010G059500 Sobic002G235200 Sobic002G235200 Sobic006G166200--Sobic002G235200 Sobic009G201700 Sobic009G201700 Sobic006G166200--Sobic009G201700
Octagon: transcription factors


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