Gene annotation
| Transcriptome id | Sobic.005G062200.1 |
|---|---|
| Synonym | TMN1, AtTMN1, Sb05g005240 |
| Functional annotation | transmembrane 9 superfamily member, putative, expressed |
| UniProt | C5Y661 |
| Pfam | PF02990 |
| Panther DB | PTHR10766 PTHR10766:SF45 |
| NCBI CDD | - |
| KEGG Orthology | K17087; transmembrane 9 superfamily member 3 |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT1G10950 : transmembrane nine 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os11g07910.1 : transmembrane 9 superfamily member, putative, expressed |
| MaizeGDB (Corn) | Zm00025a025714 , Zm00025a020630 , Zm00025a054058 , Zm00025a012791 |
| Brachypodium | KQJ89178 , KQJ92024 |
| Barley | HORVU0Hr1G010920.6 , HORVU0Hr1G010920.2 , HORVU0Hr1G010920.3 , HORVU0Hr1G010920.4 , HORVU5Hr1G036940.7 , HORVU5Hr1G036940.6 , HORVU5Hr1G036940.5 , HORVU5Hr1G036940.4 , HORVU5Hr1G036940.3 , HORVU5Hr1G036940.2 , HORVU5Hr1G036940.1 , HORVU0Hr1G010920.1 , HORVU0Hr1G010920.5 , HORVU4Hr1G018330.5 , HORVU4Hr1G018330.4 , HORVU4Hr1G018330.7 , HORVU4Hr1G018330.6 , HORVU4Hr1G018330.1 , HORVU4Hr1G018330.3 , HORVU4Hr1G018330.2 |
| Wheat | TraesCS4D02G093000 , TraesCS4B02G096600 , TraesCS5D02G128300 , TraesCS5A02G111400 , TraesCS5A02G111400 , TraesCS5B02G119400 , TraesCS5B02G119400 , TraesCS4A02G217900 , TraesCS5D02G128300 |
| Populus | PNT43115 , PNT43114 , PNT43117 , PNT43116 , PNT43113 , PNT42539 , PNT42541 , PNT42540 |
JBrowse
| Sobic.005G062200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G088872 | - | - |
| 2 | Sobic.001G263600 | ubiquitin carboxyl-terminal hydrolase 5, putative, expressed | K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11 |
| 3 | Sobic.002G401500 | WD domain, G-beta repeat domain containing protein, expressed | K14005: protein transport protein SEC31 |
| 4 | Sobic.006G184900 | tetratricopeptide repeat domain containing protein, expressed | K15176: RNA polymerase-associated protein CTR9 |
| 5 | Sobic.002G042600 | ubiquitin carboxyl-terminal hydrolase, putative, expressed | K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7 |
| 6 | Sobic.003G209200 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed | K04354: serine/threonine-protein phosphatase 2A regulatory subunit B |
| 7 | Sobic.003G114400 | expressed protein | K05288: GPI ethanolamine phosphate transferase 3 subunit O |
| 8 | Sobic.001G065100 | cullin, putative, expressed | K10609: cullin 4 |
| 9 | Sobic.002G335600 | eukaryotic translation initiation factor 4G, putative, expressed | K03260: translation initiation factor 4G |
| 10 | Sobic.002G429300 | importin subunit beta, putative, expressed | - |
| 11 | Sobic.009G131300 | cation-transporting ATPase, putative, expressed | K14950: ATP13A1, manganese-transporting P-type ATPase |
| 12 | Sobic.007G005500 | ECT protein, putative, expressed | - |
| 13 | Sobic.006G260500 | expressed protein | - |
| 14 | Sobic.006G174850 | - | K15193: SPTY2D1, protein SPT2 |
| 15 | Sobic.010G059500 | pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed | K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22 |
| 16 | Sobic.005G090300 | glycerophosphoryl diester phosphodiesterase family protein, putative, expressed | - |
| 17 | Sobic.001G255800 | CPuORF15 - conserved peptide uORF-containing transcript, expressed | - |
| 18 | Sobic.004G053500 | HEAT repeat family protein, putative, expressed | K17263: CAND1, cullin-associated NEDD8-dissociated protein 1 |
| 19 | Sobic.004G241900 | OsDegp3 - Putative Deg protease homologue, expressed | - |
| 20 | Sobic.006G077300 | expressed protein | K17637: EXOC2, exocyst complex component 2 |
Gene co-expression network
Octagon: transcription factors
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