Gene annotation
Transcriptome id Sobic.002G401500.1
Synonym Sb02g041640
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QFY2 , Q9XE76
Pfam PF12931
Panther DB PTHR13923 PTHR13923:SF11
NCBI CDD -
KEGG Orthology K14005; protein transport protein SEC31
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63460 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os07g46370.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036620 , Zm00025a032509 , Zm00025a015339 , Zm00025a035261 , Zm00025a035262 , Zm00025a023982 , Zm00025a049011 , Zm00025a047787 , Zm00025a019839 , Zm00025a002747 , Zm00025a002748 , Zm00025a010682 , Zm00025a010683 , Zm00025a017144 , Zm00025a017145
Brachypodium KQK14881
Barley HORVU2Hr1G023350.17 , HORVU2Hr1G023350.16 , HORVU2Hr1G023350.15 , HORVU2Hr1G023350.14 , HORVU2Hr1G023350.13 , HORVU2Hr1G023350.12 , HORVU2Hr1G023350.11 , HORVU2Hr1G023350.10 , HORVU2Hr1G023350.19 , HORVU2Hr1G023350.18 , HORVU2Hr1G023350.9 , HORVU2Hr1G023350.8 , HORVU2Hr1G023350.7 , HORVU2Hr1G023350.6 , HORVU2Hr1G023350.5 , HORVU2Hr1G023350.3 , HORVU2Hr1G023350.2 , HORVU2Hr1G023350.1 , HORVU2Hr1G023350.27 , HORVU2Hr1G023350.25 , HORVU2Hr1G023350.28 , HORVU2Hr1G023350.26 , HORVU2Hr1G023350.22 , HORVU2Hr1G023350.23 , HORVU2Hr1G023350.20 , HORVU2Hr1G023350.21
Wheat TraesCS2D02G135000 , TraesCS2D02G135000 , TraesCS2D02G135000 , TraesCS2D02G135000 , TraesCS2D02G135000 , TraesCS2D02G135000 , TraesCS2D02G135000 , TraesCS2A02G132900 , TraesCS2A02G132900 , TraesCS2A02G132900 , TraesCS2A02G132900 , TraesCS2A02G132900 , TraesCS2A02G132900 , TraesCS2B02G156400 , TraesCS2B02G156400 , TraesCS2B02G156400 , TraesCS2B02G156400
Populus -


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cDNA sequences
Sobic.002G401500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G322400 WD40-like, putative, expressed -
2 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
3 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
4 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
5 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
6 Sobic.002G429300 importin subunit beta, putative, expressed -
7 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
8 Sobic.008G088872 - -
9 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
10 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
11 Sobic.008G124800 expressed protein -
12 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
13 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
14 Sobic.002G179400 DNA binding protein, putative, expressed -
15 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
16 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
17 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
18 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
19 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -
20 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7


Gene co-expression network
sample Sobic002G401500 Sobic002G401500 Sobic004G322400 Sobic004G322400 Sobic002G401500--Sobic004G322400 Sobic009G131300 Sobic009G131300 Sobic002G401500--Sobic009G131300 Sobic002G042600 Sobic002G042600 Sobic002G401500--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G401500--Sobic004G053500 Sobic005G062200 Sobic005G062200 Sobic002G401500--Sobic005G062200 Sobic002G429300 Sobic002G429300 Sobic002G401500--Sobic002G429300 Sobic001G065100 Sobic001G065100 Sobic002G401500--Sobic001G065100 Sobic008G088872 Sobic008G088872 Sobic002G401500--Sobic008G088872 Sobic001G263600 Sobic001G263600 Sobic002G401500--Sobic001G263600 Sobic004G322400--Sobic002G401500 Sobic004G322400--Sobic002G042600 Sobic004G322400--Sobic009G131300 Sobic010G223100 Sobic010G223100 Sobic004G322400--Sobic010G223100 Sobic008G124800 Sobic008G124800 Sobic004G322400--Sobic008G124800 Sobic002G179400 Sobic002G179400 Sobic004G322400--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic004G322400--Sobic010G059500 Sobic004G322400--Sobic001G065100 Sobic010G275500 Sobic010G275500 Sobic004G322400--Sobic010G275500 Sobic009G131300--Sobic002G429300 Sobic009G131300--Sobic002G401500 Sobic005G162500 Sobic005G162500 Sobic009G131300--Sobic005G162500 Sobic009G131300--Sobic008G088872 Sobic009G131300--Sobic010G059500 Sobic008G098900 Sobic008G098900 Sobic009G131300--Sobic008G098900 Sobic006G184900 Sobic006G184900 Sobic009G131300--Sobic006G184900 Sobic001G493700 Sobic001G493700 Sobic009G131300--Sobic001G493700 Sobic009G084900 Sobic009G084900 Sobic009G131300--Sobic009G084900 Sobic002G042600--Sobic001G065100 Sobic002G042600--Sobic006G184900 Sobic002G042600--Sobic008G098900 Sobic002G042600--Sobic002G401500 Sobic002G042600--Sobic002G179400 Sobic002G042600--Sobic004G322400 Sobic002G042600--Sobic002G429300 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic004G053500--Sobic002G401500 Sobic004G053500--Sobic002G179400 Sobic002G335600 Sobic002G335600 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic004G053500--Sobic005G162500 Sobic005G062200--Sobic008G088872 Sobic005G062200--Sobic001G263600 Sobic005G062200--Sobic002G401500 Sobic005G062200--Sobic006G184900 Sobic005G062200--Sobic002G042600 Sobic003G209200 Sobic003G209200 Sobic005G062200--Sobic003G209200 Sobic003G114400 Sobic003G114400 Sobic005G062200--Sobic003G114400 Sobic005G062200--Sobic001G065100 Sobic005G062200--Sobic002G335600 Sobic002G429300--Sobic009G131300 Sobic002G429300--Sobic005G162500 Sobic002G429300--Sobic006G184900 Sobic002G429300--Sobic001G263600 Sobic002G429300--Sobic002G042600 Sobic002G429300--Sobic008G098900 Sobic002G429300--Sobic001G493700 Sobic002G429300--Sobic002G335600 Sobic002G429300--Sobic008G088872 Sobic001G065100--Sobic002G042600 Sobic001G065100--Sobic002G179400 Sobic001G065100--Sobic001G263600 Sobic001G065100--Sobic002G401500 Sobic001G065100--Sobic001G493700 Sobic001G065100--Sobic008G088872 Sobic001G065100--Sobic004G322400 Sobic001G065100--Sobic005G062200 Sobic001G065100--Sobic003G296900 Sobic008G088872--Sobic005G162500 Sobic008G088872--Sobic001G370900 Sobic008G088872--Sobic009G131300 Sobic008G088872--Sobic006G184900 Sobic008G088872--Sobic005G062200 Sobic008G088872--Sobic001G263600 Sobic008G088872--Sobic002G042600 Sobic008G088872--Sobic002G429300 Sobic008G088872--Sobic002G335600 Sobic001G263600--Sobic008G088872 Sobic001G263600--Sobic002G429300 Sobic002G142900 Sobic002G142900 Sobic001G263600--Sobic002G142900 Sobic001G263600--Sobic005G062200 Sobic001G263600--Sobic008G098900 Sobic001G263600--Sobic002G042600 Sobic001G273700 Sobic001G273700 Sobic001G263600--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G263600--Sobic003G072200 Sobic001G263600--Sobic009G131300
Octagon: transcription factors


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