Gene annotation
Transcriptome id Sobic.002G179400.1,Sobic.002G179400.2
Synonym Sb02g022810, DUO3
Functional annotation DNA binding protein, putative, expressed
UniProt A0A1W0W4M6 , C5XAM6
Pfam -
Panther DB PTHR16088
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G64570 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os03g46950.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a046639
Brachypodium KQJ88273 , PNT76285 , PNT76284 , PNT76287 , PNT76286
Barley HORVU7Hr1G031870.4 , HORVU7Hr1G031870.1 , HORVU7Hr1G031870.2 , HORVU7Hr1G031870.3 , HORVU7Hr1G031870.5 , HORVU7Hr1G031870.6 , HORVU7Hr1G031870.7
Wheat TraesCS7D02G156400 , TraesCS7A02G156000 , TraesCS7A02G156000 , TraesCS7A02G156000 , TraesCS7B02G060100 , TraesCS7B02G060100 , TraesCS7B02G060100 , TraesCS7B02G060100 , TraesCS7B02G060100 , TraesCS7B02G060100 , TraesCS7D02G156400 , TraesCS7D02G156400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
2 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
3 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
4 Sobic.002G429300 importin subunit beta, putative, expressed -
5 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
6 Sobic.003G233400 expressed protein -
7 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
8 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
9 Sobic.004G322400 WD40-like, putative, expressed -
10 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
11 Sobic.001G004400 - K14290: XPO1, exportin-1
12 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
14 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
15 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
16 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
17 Sobic.001G457900 expressed protein -
18 Sobic.010G000800 PHD-finger domain containing protein, expressed -
19 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
20 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7


Gene co-expression network
sample Sobic002G179400 Sobic002G179400 Sobic001G493700 Sobic001G493700 Sobic002G179400--Sobic001G493700 Sobic002G042600 Sobic002G042600 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G429300 Sobic002G429300 Sobic002G179400--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G133300 Sobic002G133300 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic004G322400 Sobic004G322400 Sobic002G179400--Sobic004G322400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic001G493700--Sobic002G429300 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic002G042600--Sobic001G065100 Sobic002G042600--Sobic006G184900 Sobic008G098900 Sobic008G098900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G042600--Sobic002G179400 Sobic002G042600--Sobic004G322400 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic004G053500--Sobic002G401500 Sobic004G053500--Sobic002G179400 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic004G053500--Sobic005G162500 Sobic002G429300--Sobic009G131300 Sobic002G429300--Sobic005G162500 Sobic002G429300--Sobic006G184900 Sobic001G263600 Sobic001G263600 Sobic002G429300--Sobic001G263600 Sobic002G429300--Sobic002G042600 Sobic002G429300--Sobic008G098900 Sobic002G429300--Sobic001G493700 Sobic002G429300--Sobic002G335600 Sobic002G429300--Sobic008G088872 Sobic006G184900--Sobic002G335600 Sobic006G184900--Sobic002G429300 Sobic006G184900--Sobic008G088872 Sobic006G184900--Sobic002G042600 Sobic006G184900--Sobic001G370900 Sobic006G184900--Sobic009G131300 Sobic006G184900--Sobic001G493700 Sobic006G184900--Sobic002G179400 Sobic005G062200 Sobic005G062200 Sobic006G184900--Sobic005G062200 Sobic001G287500 Sobic001G287500 Sobic003G233400--Sobic001G287500 Sobic003G072200 Sobic003G072200 Sobic003G233400--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic003G233400--Sobic007G098500 Sobic001G137000 Sobic001G137000 Sobic003G233400--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic003G233400--Sobic003G312100 Sobic008G092600 Sobic008G092600 Sobic003G233400--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic003G233400--Sobic002G396500 Sobic003G233400--Sobic002G179400 Sobic004G051200 Sobic004G051200 Sobic003G233400--Sobic004G051200 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic001G065100--Sobic002G042600 Sobic001G065100--Sobic002G179400 Sobic001G065100--Sobic001G263600 Sobic001G065100--Sobic002G401500 Sobic001G065100--Sobic001G493700 Sobic001G065100--Sobic008G088872 Sobic001G065100--Sobic004G322400 Sobic001G065100--Sobic005G062200 Sobic001G065100--Sobic003G296900 Sobic004G322400--Sobic002G401500 Sobic004G322400--Sobic002G042600 Sobic004G322400--Sobic009G131300 Sobic010G223100 Sobic010G223100 Sobic004G322400--Sobic010G223100 Sobic008G124800 Sobic008G124800 Sobic004G322400--Sobic008G124800 Sobic004G322400--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic004G322400--Sobic010G059500 Sobic004G322400--Sobic001G065100 Sobic010G275500 Sobic010G275500 Sobic004G322400--Sobic010G275500
Octagon: transcription factors


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