Gene annotation
Transcriptome id Sobic.003G221400.1
Synonym EMB2753, Sb03g027980
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5XR25
Pfam PF00515 PF12569
Panther DB PTHR22767 PTHR22767:SF2
NCBI CDD -
KEGG Orthology K00670; NAA30, N-alpha-acetyltransferase 30
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G80410 : tetratricopeptide repeat (TPR)-containing protein
RAP-DB (Rice) LOC_Os01g43030.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052235 , Zm00025a037062 , Zm00025a028408
Brachypodium KQK08736
Barley HORVU3Hr1G054490.19 , HORVU3Hr1G054490.18 , HORVU3Hr1G054490.17 , HORVU3Hr1G054490.16 , HORVU3Hr1G054490.15 , HORVU3Hr1G054490.14 , HORVU3Hr1G054490.13 , HORVU3Hr1G054490.12 , HORVU3Hr1G054490.11 , HORVU3Hr1G054490.10 , HORVU3Hr1G054490.7 , HORVU3Hr1G054490.6 , HORVU3Hr1G054490.5 , HORVU3Hr1G054490.3 , HORVU3Hr1G054490.2 , HORVU3Hr1G054490.1 , HORVU3Hr1G054490.9 , HORVU3Hr1G054490.8 , HORVU3Hr1G054490.26 , HORVU3Hr1G054490.27 , HORVU3Hr1G054490.24 , HORVU3Hr1G054490.25 , HORVU3Hr1G054490.22 , HORVU3Hr1G054490.23 , HORVU3Hr1G054490.20 , HORVU3Hr1G054490.21 , HORVU3Hr1G054490.28
Wheat TraesCS3D02G230900 , TraesCS3D02G230900 , TraesCS3B02G252100 , TraesCS3B02G252100 , TraesCS3A02G223400 , TraesCS3A02G223400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
2 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
3 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
4 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
5 Sobic.001G004400 - K14290: XPO1, exportin-1
6 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
7 Sobic.002G179400 DNA binding protein, putative, expressed -
8 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
9 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
10 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
11 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2
12 Sobic.003G171400 HEAT repeat family protein, putative, expressed -
13 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
14 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
15 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
16 Sobic.009G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
18 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
19 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
20 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase


Gene co-expression network
sample Sobic003G221400 Sobic003G221400 Sobic007G054800 Sobic007G054800 Sobic003G221400--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic003G221400--Sobic005G162500 Sobic001G493700 Sobic001G493700 Sobic003G221400--Sobic001G493700 Sobic001G110600 Sobic001G110600 Sobic003G221400--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic003G221400--Sobic001G004400 Sobic001G333100 Sobic001G333100 Sobic003G221400--Sobic001G333100 Sobic002G179400 Sobic002G179400 Sobic003G221400--Sobic002G179400 Sobic001G192000 Sobic001G192000 Sobic003G221400--Sobic001G192000 Sobic008G085300 Sobic008G085300 Sobic003G221400--Sobic008G085300 Sobic007G054800--Sobic003G221400 Sobic007G054800--Sobic001G110600 Sobic007G054800--Sobic001G004400 Sobic007G054800--Sobic005G162500 Sobic006G280000 Sobic006G280000 Sobic007G054800--Sobic006G280000 Sobic002G256700 Sobic002G256700 Sobic007G054800--Sobic002G256700 Sobic002G133300 Sobic002G133300 Sobic007G054800--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic007G054800--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic007G054800--Sobic004G131300 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic003G186000 Sobic003G186000 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic004G276400 Sobic004G276400 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic001G493700--Sobic002G179400 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic001G493700--Sobic009G131300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic001G110600--Sobic007G054800 Sobic001G110600--Sobic001G004400 Sobic001G110600--Sobic003G221400 Sobic001G110600--Sobic001G493700 Sobic001G191700 Sobic001G191700 Sobic001G110600--Sobic001G191700 Sobic001G110600--Sobic005G162500 Sobic003G233400 Sobic003G233400 Sobic001G110600--Sobic003G233400 Sobic001G110600--Sobic008G085300 Sobic001G287500 Sobic001G287500 Sobic001G110600--Sobic001G287500 Sobic001G004400--Sobic002G133300 Sobic001G004400--Sobic001G110600 Sobic001G004400--Sobic007G054800 Sobic004G248600 Sobic004G248600 Sobic001G004400--Sobic004G248600 Sobic003G312100 Sobic003G312100 Sobic001G004400--Sobic003G312100 Sobic001G004400--Sobic001G493700 Sobic001G004400--Sobic003G221400 Sobic001G004400--Sobic004G276400 Sobic001G004400--Sobic002G179400 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic001G333100--Sobic002G020700 Sobic001G333100--Sobic003G221400 Sobic001G333100--Sobic001G192000 Sobic010G020400 Sobic010G020400 Sobic001G333100--Sobic010G020400 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500 Sobic002G179400--Sobic001G493700 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G179400--Sobic002G429300 Sobic002G179400--Sobic006G184900 Sobic002G179400--Sobic003G233400 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic004G322400 Sobic004G322400 Sobic002G179400--Sobic004G322400 Sobic002G275700 Sobic002G275700 Sobic001G192000--Sobic002G275700 Sobic009G255700 Sobic009G255700 Sobic001G192000--Sobic009G255700 Sobic001G192000--Sobic005G162500 Sobic001G192000--Sobic008G088872 Sobic001G192000--Sobic001G333100 Sobic003G195000 Sobic003G195000 Sobic001G192000--Sobic003G195000 Sobic002G146300 Sobic002G146300 Sobic001G192000--Sobic002G146300 Sobic001G192000--Sobic001G370900 Sobic001G192000--Sobic003G221400 Sobic008G085300--Sobic008G098900 Sobic001G542500 Sobic001G542500 Sobic008G085300--Sobic001G542500 Sobic008G085300--Sobic005G162500 Sobic008G085300--Sobic004G276400 Sobic008G092600 Sobic008G092600 Sobic008G085300--Sobic008G092600 Sobic002G147600 Sobic002G147600 Sobic008G085300--Sobic002G147600 Sobic008G085300--Sobic003G186000 Sobic008G085300--Sobic001G370900 Sobic004G291900 Sobic004G291900 Sobic008G085300--Sobic004G291900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.