Gene annotation
Transcriptome id Sobic.009G256900.1,Sobic.009G256900.2
Synonym Sb09g030670
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6PAS1 , A0A1B6PAP5
Pfam PF13365
Panther DB PTHR18868 PTHR18868:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g01940.3 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK22064 , KQK21986
Barley -
Wheat TraesCS2B02G204000 , TraesCS5A02G290800 , TraesCS5B02G289700 , TraesCS2A02G417000 , TraesCS5D02G297800 , TraesCS5B02G289300 , TraesCS7B02G229200 , TraesCS7B02G229200
Populus -


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cDNA sequences
Sobic.009G256900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
2 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
3 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
4 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
5 Sobic.001G002000 protein kinase domain containing protein, expressed -
6 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
7 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
8 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
9 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
10 Sobic.002G429300 importin subunit beta, putative, expressed -
11 Sobic.002G179400 DNA binding protein, putative, expressed -
12 Sobic.009G084900 expressed protein -
13 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
14 Sobic.003G196300 DNA binding protein, putative, expressed -
15 Sobic.004G023100 protein binding protein, putative, expressed -
16 Sobic.004G322400 WD40-like, putative, expressed -
17 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
18 Sobic.007G063000 expressed protein -
19 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
20 Sobic.001G194200 diacylglycerol kinase, putative, expressed -


Gene co-expression network
sample Sobic009G256900 Sobic009G256900 Sobic001G493700 Sobic001G493700 Sobic009G256900--Sobic001G493700 Sobic002G133300 Sobic002G133300 Sobic009G256900--Sobic002G133300 Sobic003G441900 Sobic003G441900 Sobic009G256900--Sobic003G441900 Sobic006G127600 Sobic006G127600 Sobic009G256900--Sobic006G127600 Sobic001G002000 Sobic001G002000 Sobic009G256900--Sobic001G002000 Sobic003G095900 Sobic003G095900 Sobic009G256900--Sobic003G095900 Sobic003G221400 Sobic003G221400 Sobic009G256900--Sobic003G221400 Sobic001G089600 Sobic001G089600 Sobic009G256900--Sobic001G089600 Sobic006G184900 Sobic006G184900 Sobic009G256900--Sobic006G184900 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic005G167700 Sobic005G167700 Sobic003G441900--Sobic005G167700 Sobic003G441900--Sobic001G433800 Sobic003G441900--Sobic002G133300 Sobic010G123600 Sobic010G123600 Sobic003G441900--Sobic010G123600 Sobic001G151100 Sobic001G151100 Sobic003G441900--Sobic001G151100 Sobic003G441900--Sobic004G276400 Sobic001G020000 Sobic001G020000 Sobic003G441900--Sobic001G020000 Sobic004G334300 Sobic004G334300 Sobic003G441900--Sobic004G334300 Sobic003G441900--Sobic001G194200 Sobic007G162100 Sobic007G162100 Sobic006G127600--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic006G127600--Sobic006G261400 Sobic008G157200 Sobic008G157200 Sobic006G127600--Sobic008G157200 Sobic006G127600--Sobic009G256900 Sobic010G000800 Sobic010G000800 Sobic006G127600--Sobic010G000800 Sobic001G251100 Sobic001G251100 Sobic006G127600--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic006G127600--Sobic001G333100 Sobic003G379200 Sobic003G379200 Sobic006G127600--Sobic003G379200 Sobic006G131000 Sobic006G131000 Sobic006G127600--Sobic006G131000 Sobic001G002000--Sobic001G194200 Sobic001G002000--Sobic001G289800 Sobic004G291900 Sobic004G291900 Sobic001G002000--Sobic004G291900 Sobic003G422500 Sobic003G422500 Sobic001G002000--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic001G002000--Sobic010G247800 Sobic010G010700 Sobic010G010700 Sobic001G002000--Sobic010G010700 Sobic004G034900 Sobic004G034900 Sobic001G002000--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic001G002000--Sobic001G289600 Sobic002G411600 Sobic002G411600 Sobic001G002000--Sobic002G411600 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic003G095900--Sobic001G089600 Sobic003G095900--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic003G095900--Sobic004G276400 Sobic003G095900--Sobic001G289800 Sobic007G054800 Sobic007G054800 Sobic003G221400--Sobic007G054800 Sobic003G221400--Sobic005G162500 Sobic003G221400--Sobic001G493700 Sobic001G110600 Sobic001G110600 Sobic003G221400--Sobic001G110600 Sobic003G221400--Sobic001G004400 Sobic003G221400--Sobic001G333100 Sobic003G221400--Sobic002G179400 Sobic001G192000 Sobic001G192000 Sobic003G221400--Sobic001G192000 Sobic008G085300 Sobic008G085300 Sobic003G221400--Sobic008G085300 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G089600--Sobic001G493700 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic006G184900--Sobic002G335600 Sobic006G184900--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic006G184900--Sobic008G088872 Sobic006G184900--Sobic002G042600 Sobic001G370900 Sobic001G370900 Sobic006G184900--Sobic001G370900 Sobic006G184900--Sobic009G131300 Sobic006G184900--Sobic001G493700 Sobic006G184900--Sobic002G179400 Sobic005G062200 Sobic005G062200 Sobic006G184900--Sobic005G062200
Octagon: transcription factors


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