Gene annotation
Transcriptome id Sobic.004G023100.1
Synonym Sb04g002063
Functional annotation protein binding protein, putative, expressed
UniProt C5XT55
Pfam PF00637 PF12816
Panther DB PTHR12616 PTHR12616:SF6
NCBI CDD KOG2079; Vacuolar assembly/sorting protein VPS8
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT4G00800 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os02g03220.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a018783
Brachypodium KQJ93059 , KQJ93058 , KQJ93060 , PNT65780 , PNT65775 , PNT65774 , PNT65779 , PNT65778 , PNT65777 , PNT65776
Barley HORVU6Hr1G014170.15 , HORVU6Hr1G014170.14 , HORVU6Hr1G014170.16 , HORVU6Hr1G014170.11 , HORVU6Hr1G014170.10 , HORVU6Hr1G014170.13 , HORVU6Hr1G014170.12 , HORVU7Hr1G107790.17 , HORVU7Hr1G107790.16 , HORVU7Hr1G107790.15 , HORVU7Hr1G107790.14 , HORVU7Hr1G107790.13 , HORVU7Hr1G107790.12 , HORVU7Hr1G107790.11 , HORVU7Hr1G107790.10 , HORVU7Hr1G107790.40 , HORVU7Hr1G107790.41 , HORVU7Hr1G107790.42 , HORVU7Hr1G107790.43 , HORVU7Hr1G107790.44 , HORVU7Hr1G107790.45 , HORVU7Hr1G107790.46 , HORVU7Hr1G107790.47 , HORVU7Hr1G107790.5 , HORVU7Hr1G107790.4 , HORVU7Hr1G107790.2 , HORVU7Hr1G107790.1 , HORVU7Hr1G107790.8 , HORVU6Hr1G014170.17 , HORVU7Hr1G107790.31 , HORVU7Hr1G107790.30 , HORVU7Hr1G107790.33 , HORVU7Hr1G107790.32 , HORVU7Hr1G107790.35 , HORVU7Hr1G107790.34 , HORVU7Hr1G107790.37 , HORVU7Hr1G107790.36 , HORVU7Hr1G107790.39 , HORVU7Hr1G107790.38 , HORVU7Hr1G107790.19 , HORVU7Hr1G107790.18 , HORVU7Hr1G107790.7 , HORVU6Hr1G014170.9 , HORVU6Hr1G014170.8 , HORVU6Hr1G014170.1 , HORVU6Hr1G014170.3 , HORVU6Hr1G014170.2 , HORVU6Hr1G014170.5 , HORVU6Hr1G014170.4 , HORVU6Hr1G014170.7 , HORVU6Hr1G014170.6 , HORVU7Hr1G094560.3 , HORVU7Hr1G094560.2 , HORVU7Hr1G094560.7 , HORVU7Hr1G094560.6 , HORVU7Hr1G094560.5 , HORVU7Hr1G094560.4 , HORVU7Hr1G107790.6 , HORVU7Hr1G107790.26 , HORVU7Hr1G107790.27 , HORVU7Hr1G107790.24 , HORVU7Hr1G107790.25 , HORVU7Hr1G107790.22 , HORVU7Hr1G107790.23 , HORVU7Hr1G107790.20 , HORVU7Hr1G107790.21 , HORVU7Hr1G107790.28 , HORVU7Hr1G107790.29 , HORVU7Hr1G107790.9
Wheat TraesCS7A02G443900 , TraesCS7B02G379500 , TraesCS7B02G379500 , TraesCS6B02G114600 , TraesCS6B02G114600 , TraesCS6B02G114600 , TraesCS7D02G459000 , TraesCS6D02G076200 , TraesCS6D02G076200 , TraesCS6A02G082800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
2 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
3 Sobic.002G397500 SAC3/GANP family protein, expressed -
4 Sobic.004G040500 expressed protein -
5 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
6 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
7 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13
8 Sobic.001G002000 protein kinase domain containing protein, expressed -
9 Sobic.010G223100 PAP/25A associated domain containing protein, putative, expressed -
10 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
11 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
12 Sobic.009G084900 expressed protein -
13 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
14 Sobic.004G204100 expressed protein -
15 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
16 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
17 Sobic.007G063000 expressed protein -
18 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
19 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
20 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11


Gene co-expression network
sample Sobic004G023100 Sobic004G023100 Sobic001G542500 Sobic001G542500 Sobic004G023100--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic004G023100--Sobic008G085300 Sobic002G397500 Sobic002G397500 Sobic004G023100--Sobic002G397500 Sobic004G040500 Sobic004G040500 Sobic004G023100--Sobic004G040500 Sobic004G291900 Sobic004G291900 Sobic004G023100--Sobic004G291900 Sobic009G109200 Sobic009G109200 Sobic004G023100--Sobic009G109200 Sobic001G287500 Sobic001G287500 Sobic004G023100--Sobic001G287500 Sobic001G002000 Sobic001G002000 Sobic004G023100--Sobic001G002000 Sobic010G223100 Sobic010G223100 Sobic004G023100--Sobic010G223100 Sobic001G542500--Sobic004G291900 Sobic001G289800 Sobic001G289800 Sobic001G542500--Sobic001G289800 Sobic001G542500--Sobic008G085300 Sobic004G276400 Sobic004G276400 Sobic001G542500--Sobic004G276400 Sobic008G098900 Sobic008G098900 Sobic001G542500--Sobic008G098900 Sobic003G196300 Sobic003G196300 Sobic001G542500--Sobic003G196300 Sobic001G117200 Sobic001G117200 Sobic001G542500--Sobic001G117200 Sobic001G542500--Sobic009G109200 Sobic004G174200 Sobic004G174200 Sobic001G542500--Sobic004G174200 Sobic008G085300--Sobic008G098900 Sobic008G085300--Sobic001G542500 Sobic005G162500 Sobic005G162500 Sobic008G085300--Sobic005G162500 Sobic008G085300--Sobic004G276400 Sobic008G092600 Sobic008G092600 Sobic008G085300--Sobic008G092600 Sobic002G147600 Sobic002G147600 Sobic008G085300--Sobic002G147600 Sobic003G186000 Sobic003G186000 Sobic008G085300--Sobic003G186000 Sobic001G370900 Sobic001G370900 Sobic008G085300--Sobic001G370900 Sobic008G085300--Sobic004G291900 Sobic003G408600 Sobic003G408600 Sobic002G397500--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G397500--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic004G242400 Sobic004G242400 Sobic002G397500--Sobic004G242400 Sobic002G397500--Sobic004G276400 Sobic010G112100 Sobic010G112100 Sobic002G397500--Sobic010G112100 Sobic004G040500--Sobic008G092600 Sobic004G040500--Sobic002G147600 Sobic002G335600 Sobic002G335600 Sobic004G040500--Sobic002G335600 Sobic001G493700 Sobic001G493700 Sobic004G040500--Sobic001G493700 Sobic004G040500--Sobic003G072200 Sobic003G233400 Sobic003G233400 Sobic004G040500--Sobic003G233400 Sobic004G040500--Sobic004G023100 Sobic004G040500--Sobic001G287500 Sobic003G171400 Sobic003G171400 Sobic004G040500--Sobic003G171400 Sobic001G194200 Sobic001G194200 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G291900--Sobic004G174200 Sobic004G291900--Sobic004G276400 Sobic005G001000 Sobic005G001000 Sobic004G291900--Sobic005G001000 Sobic004G034900 Sobic004G034900 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic004G291900--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic004G291900--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic001G287500--Sobic003G233400 Sobic001G287500--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic001G287500--Sobic007G098500 Sobic004G051200 Sobic004G051200 Sobic001G287500--Sobic004G051200 Sobic001G287500--Sobic008G092600 Sobic001G347500 Sobic001G347500 Sobic001G287500--Sobic001G347500 Sobic001G426600 Sobic001G426600 Sobic001G287500--Sobic001G426600 Sobic001G287500--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic001G287500--Sobic004G204100 Sobic001G002000--Sobic001G194200 Sobic001G002000--Sobic001G289800 Sobic001G002000--Sobic004G291900 Sobic003G422500 Sobic003G422500 Sobic001G002000--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic001G002000--Sobic010G247800 Sobic001G002000--Sobic010G010700 Sobic001G002000--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic001G002000--Sobic001G289600 Sobic002G411600 Sobic002G411600 Sobic001G002000--Sobic002G411600 Sobic010G223100--Sobic004G204100 Sobic004G322400 Sobic004G322400 Sobic010G223100--Sobic004G322400 Sobic010G275500 Sobic010G275500 Sobic010G223100--Sobic010G275500 Sobic009G084900 Sobic009G084900 Sobic010G223100--Sobic009G084900 Sobic010G223100--Sobic004G023100 Sobic010G223100--Sobic001G287500 Sobic010G223100--Sobic003G072200 Sobic003G189600 Sobic003G189600 Sobic010G223100--Sobic003G189600 Sobic010G185400 Sobic010G185400 Sobic010G223100--Sobic010G185400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.