Gene annotation
Transcriptome id Sobic.004G260100.1,Sobic.004G260100.2
Synonym Sb04g029850
Functional annotation tetratricopeptide repeat, putative, expressed
UniProt A0A1Z5RQ44 , C5XZV7
Pfam PF05303 PF15044 PF13424 PF12807 PF13236
Panther DB PTHR12601 PTHR12601:SF6
NCBI CDD -
KEGG Orthology K03255; TIF31, protein TIF31
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52140 : tetratricopeptide repeat (TPR)-containing protein
RAP-DB (Rice) LOC_Os02g48620.2,LOC_Os02g48620.1 : tetratricopeptide repeat, putative, expressed
MaizeGDB (Corn) Zm00025a055740 , Zm00025a032534 , Zm00025a035859 , Zm00025a044685 , Zm00025a021818
Brachypodium KQK01033
Barley HORVU6Hr1G070560.5 , HORVU6Hr1G070560.2 , HORVU6Hr1G070560.16 , HORVU6Hr1G070560.17 , HORVU6Hr1G070560.14 , HORVU6Hr1G070560.15 , HORVU6Hr1G070560.12 , HORVU6Hr1G070560.13 , HORVU6Hr1G070560.10 , HORVU6Hr1G070560.11 , HORVU6Hr1G070560.8 , HORVU6Hr1G070560.9 , HORVU6Hr1G070560.4 , HORVU6Hr1G070560.6 , HORVU6Hr1G070560.7 , HORVU6Hr1G070560.1 , HORVU6Hr1G070560.3
Wheat TraesCS6A02G280800 , TraesCS6A02G280800 , TraesCS6A02G280800 , TraesCS6B02G309600 , TraesCS6B02G309600 , TraesCS6B02G309600 , TraesCS6D02G261100 , TraesCS6D02G261100 , TraesCS6D02G261100 , TraesCS6B02G309600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G214600 expressed protein -
2 Sobic.009G084900 expressed protein -
3 Sobic.002G397500 SAC3/GANP family protein, expressed -
4 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
5 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
6 Sobic.001G334700 OsWAK28 - OsWAK receptor-like protein kinase, expressed -
7 Sobic.010G147833 - -
8 Sobic.004G023100 protein binding protein, putative, expressed -
9 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
10 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
11 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
12 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
13 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
14 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
15 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
16 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
17 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
18 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
19 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
20 Sobic.007G042400 HEAT repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic004G260100 Sobic004G260100 Sobic001G214600 Sobic001G214600 Sobic004G260100--Sobic001G214600 Sobic009G084900 Sobic009G084900 Sobic004G260100--Sobic009G084900 Sobic002G397500 Sobic002G397500 Sobic004G260100--Sobic002G397500 Sobic001G089600 Sobic001G089600 Sobic004G260100--Sobic001G089600 Sobic001G493200 Sobic001G493200 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic010G147833 Sobic010G147833 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G260100--Sobic010G053600 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic001G214600--Sobic009G084900 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic004G223600 Sobic004G223600 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G219900 Sobic001G219900 Sobic001G214600--Sobic001G219900 Sobic001G214600--Sobic001G493200 Sobic010G059500 Sobic010G059500 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic009G084900--Sobic004G260100 Sobic003G408600 Sobic003G408600 Sobic002G397500--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G397500--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic002G397500--Sobic003G072200 Sobic004G242400 Sobic004G242400 Sobic002G397500--Sobic004G242400 Sobic004G276400 Sobic004G276400 Sobic002G397500--Sobic004G276400 Sobic010G112100 Sobic010G112100 Sobic002G397500--Sobic010G112100 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic001G089600--Sobic002G397500 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic001G089600--Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic001G493200--Sobic010G059500 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic001G493200--Sobic006G077200 Sobic001G493200--Sobic003G408600 Sobic001G334700--Sobic004G260100 Sobic001G334700--Sobic002G397500 Sobic003G014500 Sobic003G014500 Sobic001G334700--Sobic003G014500 Sobic001G280900 Sobic001G280900 Sobic001G334700--Sobic001G280900 Sobic002G362800 Sobic002G362800 Sobic001G334700--Sobic002G362800 Sobic003G164200 Sobic003G164200 Sobic001G334700--Sobic003G164200 Sobic008G150700 Sobic008G150700 Sobic001G334700--Sobic008G150700 Sobic007G220300 Sobic007G220300 Sobic001G334700--Sobic007G220300 Sobic006G040800 Sobic006G040800 Sobic001G334700--Sobic006G040800 Sobic010G147833--Sobic001G214600 Sobic010G147833--Sobic004G260100 Sobic001G170100 Sobic001G170100 Sobic010G147833--Sobic001G170100 Sobic007G019300 Sobic007G019300 Sobic010G147833--Sobic007G019300 Sobic001G426600 Sobic001G426600 Sobic010G147833--Sobic001G426600 Sobic003G057700 Sobic003G057700 Sobic010G147833--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic010G147833--Sobic003G249600 Sobic007G120500 Sobic007G120500 Sobic010G147833--Sobic007G120500 Sobic001G287500 Sobic001G287500 Sobic010G147833--Sobic001G287500 Sobic001G542500 Sobic001G542500 Sobic004G023100--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic004G023100--Sobic008G085300 Sobic004G023100--Sobic002G397500 Sobic004G040500 Sobic004G040500 Sobic004G023100--Sobic004G040500 Sobic004G291900 Sobic004G291900 Sobic004G023100--Sobic004G291900 Sobic004G023100--Sobic009G109200 Sobic004G023100--Sobic001G287500 Sobic001G002000 Sobic001G002000 Sobic004G023100--Sobic001G002000 Sobic010G223100 Sobic010G223100 Sobic004G023100--Sobic010G223100 Sobic001G352900 Sobic001G352900 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic010G053600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic010G053600--Sobic004G248600 Sobic010G053600--Sobic004G242400
Octagon: transcription factors


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