Gene annotation
Transcriptome id Sobic.001G214600.2,Sobic.001G214600.1
Synonym Sb01g018920
Functional annotation expressed protein
UniProt A0A1Z5S6Q4 , C5WYB1
Pfam PF00085 PF02622
Panther DB PTHR18929 PTHR18929:SF92
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19780 : -
RAP-DB (Rice) LOC_Os10g34390.1 : expressed protein
MaizeGDB (Corn) Zm00025a017569
Brachypodium PNT67581 , KQJ97183 , KQJ97181 , KQJ97180 , KQJ97182
Barley HORVU1Hr1G042560.8 , HORVU1Hr1G042560.9 , HORVU1Hr1G042560.2 , HORVU1Hr1G042560.3 , HORVU1Hr1G042560.1 , HORVU1Hr1G042560.6 , HORVU1Hr1G042560.7 , HORVU1Hr1G042560.4 , HORVU1Hr1G042560.5 , HORVU1Hr1G042560.10 , HORVU1Hr1G042560.11 , HORVU1Hr1G042560.12 , HORVU1Hr1G042560.13 , HORVU1Hr1G042560.14 , HORVU1Hr1G042560.15 , HORVU1Hr1G042560.16
Wheat TraesCS1B02G177300 , TraesCS1B02G177300 , TraesCS1D02G157800 , TraesCS1D02G157800 , TraesCS1D02G157800 , TraesCS1A02G160600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
2 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
3 Sobic.009G084900 expressed protein -
4 Sobic.010G147833 - -
5 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
6 Sobic.004G223600 transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
7 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
8 Sobic.001G219900 expressed protein -
9 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
10 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
11 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
12 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
13 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
14 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
15 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
16 Sobic.002G397500 SAC3/GANP family protein, expressed -
17 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
18 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
19 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
20 Sobic.004G023100 protein binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G214600 Sobic001G214600 Sobic004G260100 Sobic004G260100 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic009G084900 Sobic009G084900 Sobic001G214600--Sobic009G084900 Sobic010G147833 Sobic010G147833 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic004G223600 Sobic004G223600 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G219900 Sobic001G219900 Sobic001G214600--Sobic001G219900 Sobic001G493200 Sobic001G493200 Sobic001G214600--Sobic001G493200 Sobic004G260100--Sobic001G214600 Sobic004G260100--Sobic009G084900 Sobic002G397500 Sobic002G397500 Sobic004G260100--Sobic002G397500 Sobic001G089600 Sobic001G089600 Sobic004G260100--Sobic001G089600 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G260100--Sobic010G053600 Sobic001G311500 Sobic001G311500 Sobic009G247400--Sobic001G311500 Sobic010G279450 Sobic010G279450 Sobic009G247400--Sobic010G279450 Sobic009G260500 Sobic009G260500 Sobic009G247400--Sobic009G260500 Sobic004G009600 Sobic004G009600 Sobic009G247400--Sobic004G009600 Sobic009G247400--Sobic001G214600 Sobic001G363500 Sobic001G363500 Sobic009G247400--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic009G247400--Sobic001G219600 Sobic009G247400--Sobic002G317200 Sobic004G314000 Sobic004G314000 Sobic009G247400--Sobic004G314000 Sobic010G059500 Sobic010G059500 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic009G084900--Sobic004G260100 Sobic010G147833--Sobic001G214600 Sobic010G147833--Sobic004G260100 Sobic001G170100 Sobic001G170100 Sobic010G147833--Sobic001G170100 Sobic007G019300 Sobic007G019300 Sobic010G147833--Sobic007G019300 Sobic001G426600 Sobic001G426600 Sobic010G147833--Sobic001G426600 Sobic003G057700 Sobic003G057700 Sobic010G147833--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic010G147833--Sobic003G249600 Sobic007G120500 Sobic007G120500 Sobic010G147833--Sobic007G120500 Sobic001G287500 Sobic001G287500 Sobic010G147833--Sobic001G287500 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic002G317200--Sobic001G219600 Sobic002G317200--Sobic004G314000 Sobic002G317200--Sobic001G433800 Sobic003G095900 Sobic003G095900 Sobic002G317200--Sobic003G095900 Sobic004G242400 Sobic004G242400 Sobic002G317200--Sobic004G242400 Sobic002G317200--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic002G317200--Sobic005G112300 Sobic002G317200--Sobic009G260500 Sobic004G223600--Sobic001G219900 Sobic004G223600--Sobic001G214600 Sobic004G223600--Sobic002G317200 Sobic003G307000 Sobic003G307000 Sobic004G223600--Sobic003G307000 Sobic007G042400 Sobic007G042400 Sobic004G223600--Sobic007G042400 Sobic004G223600--Sobic009G247400 Sobic004G223600--Sobic001G311500 Sobic002G071500 Sobic002G071500 Sobic004G223600--Sobic002G071500 Sobic003G152400 Sobic003G152400 Sobic004G223600--Sobic003G152400 Sobic004G096400 Sobic004G096400 Sobic006G234700--Sobic004G096400 Sobic006G234700--Sobic010G059500 Sobic009G192300 Sobic009G192300 Sobic006G234700--Sobic009G192300 Sobic006G234700--Sobic007G042400 Sobic003G444800 Sobic003G444800 Sobic006G234700--Sobic003G444800 Sobic006G234700--Sobic001G493200 Sobic006G234700--Sobic009G084900 Sobic006G234700--Sobic001G433800 Sobic002G083500 Sobic002G083500 Sobic006G234700--Sobic002G083500 Sobic003G408600 Sobic003G408600 Sobic001G219900--Sobic003G408600 Sobic001G219900--Sobic002G071500 Sobic001G219900--Sobic004G223600 Sobic001G058700 Sobic001G058700 Sobic001G219900--Sobic001G058700 Sobic001G219900--Sobic002G397500 Sobic001G050600 Sobic001G050600 Sobic001G219900--Sobic001G050600 Sobic010G001100 Sobic010G001100 Sobic001G219900--Sobic010G001100 Sobic009G119000 Sobic009G119000 Sobic001G219900--Sobic009G119000 Sobic008G009700 Sobic008G009700 Sobic001G219900--Sobic008G009700 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic001G493200--Sobic010G059500 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic001G493200--Sobic006G077200 Sobic001G493200--Sobic003G408600
Octagon: transcription factors


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