Gene annotation
Transcriptome id Sobic.001G089600.1
Synonym Sb01g008080
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1B6QI08
Pfam PF00270 PF00035 PF00271 PF07717 PF04408
Panther DB PTHR18934 PTHR18934:SF103
NCBI CDD -
KEGG Orthology K14442; DHX36, ATP-dependent RNA helicase DHX36
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT5G04895 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os03g53760.1 : ATP-dependent RNA helicase DHX36, putative, expressed
MaizeGDB (Corn) Zm00025a008145
Brachypodium KQK13211
Barley HORVU5Hr1G094990.12 , HORVU5Hr1G094990.13 , HORVU5Hr1G094990.10 , HORVU5Hr1G094990.11 , HORVU5Hr1G094990.16 , HORVU5Hr1G094990.14 , HORVU5Hr1G094990.15 , HORVU5Hr1G094990.18 , HORVU5Hr1G094990.19 , HORVU5Hr1G094990.29 , HORVU5Hr1G094990.28 , HORVU5Hr1G094990.23 , HORVU5Hr1G094990.22 , HORVU5Hr1G094990.21 , HORVU5Hr1G094990.20 , HORVU5Hr1G094990.27 , HORVU5Hr1G094990.26 , HORVU5Hr1G094990.25 , HORVU5Hr1G094990.24 , HORVU5Hr1G094990.8 , HORVU5Hr1G094990.9 , HORVU5Hr1G094990.2 , HORVU5Hr1G094990.3 , HORVU5Hr1G094990.4 , HORVU5Hr1G094990.5 , HORVU5Hr1G094990.6 , HORVU5Hr1G094990.7 , HORVU5Hr1G094990.30 , HORVU5Hr1G094990.31 , HORVU5Hr1G094990.32 , HORVU5Hr1G094990.33 , HORVU5Hr1G094990.17
Wheat TraesCS5A02G387700 , TraesCS5A02G387700 , TraesCS5B02G392800 , TraesCS5D02G397600 , TraesCS5D02G397600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
2 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
3 Sobic.010G115400 pentatricopeptide, putative, expressed -
4 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
5 Sobic.002G397500 SAC3/GANP family protein, expressed -
6 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
7 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
8 Sobic.004G322400 WD40-like, putative, expressed -
9 Sobic.009G084900 expressed protein -
10 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
11 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
12 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
13 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
14 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
15 Sobic.001G214600 expressed protein -
16 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
17 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
18 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
19 Sobic.001G393900 FAD binding domain containing protein, expressed -
20 Sobic.001G004400 - K14290: XPO1, exportin-1


Gene co-expression network
sample Sobic001G089600 Sobic001G089600 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic003G095900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G095900--Sobic002G133300 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic010G003400 Sobic010G003400 Sobic006G086600--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic009G101200 Sobic009G101200 Sobic006G086600--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G086600--Sobic001G453400 Sobic004G320500 Sobic004G320500 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic010G115400--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic010G115400--Sobic002G399800 Sobic010G102600 Sobic010G102600 Sobic010G115400--Sobic010G102600 Sobic010G174700 Sobic010G174700 Sobic010G115400--Sobic010G174700 Sobic001G393900 Sobic001G393900 Sobic010G115400--Sobic001G393900 Sobic010G115400--Sobic003G095900 Sobic004G019200 Sobic004G019200 Sobic010G115400--Sobic004G019200 Sobic003G260400 Sobic003G260400 Sobic010G115400--Sobic003G260400 Sobic003G032700 Sobic003G032700 Sobic010G115400--Sobic003G032700 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic001G493700--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic002G397500--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G397500--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic002G397500--Sobic004G242400 Sobic002G397500--Sobic004G276400 Sobic010G112100 Sobic010G112100 Sobic002G397500--Sobic010G112100 Sobic001G214600 Sobic001G214600 Sobic004G260100--Sobic001G214600 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic004G260100--Sobic001G089600 Sobic001G493200 Sobic001G493200 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic010G147833 Sobic010G147833 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G260100--Sobic010G053600 Sobic004G248600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic004G248600--Sobic001G004400 Sobic004G248600--Sobic002G133300 Sobic004G248600--Sobic003G072200 Sobic003G312100 Sobic003G312100 Sobic004G248600--Sobic003G312100 Sobic003G186000 Sobic003G186000 Sobic004G248600--Sobic003G186000 Sobic004G248600--Sobic004G276400 Sobic004G248600--Sobic002G397500 Sobic004G248600--Sobic005G162500 Sobic002G401500 Sobic002G401500 Sobic004G322400--Sobic002G401500 Sobic004G322400--Sobic002G042600 Sobic004G322400--Sobic009G131300 Sobic010G223100 Sobic010G223100 Sobic004G322400--Sobic010G223100 Sobic008G124800 Sobic008G124800 Sobic004G322400--Sobic008G124800 Sobic004G322400--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic004G322400--Sobic010G059500 Sobic001G065100 Sobic001G065100 Sobic004G322400--Sobic001G065100 Sobic010G275500 Sobic010G275500 Sobic004G322400--Sobic010G275500 Sobic009G084900--Sobic010G059500 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic009G084900--Sobic001G433800 Sobic009G084900--Sobic009G131300 Sobic009G084900--Sobic002G133300 Sobic006G077200 Sobic006G077200 Sobic009G084900--Sobic006G077200 Sobic008G082500 Sobic008G082500 Sobic009G084900--Sobic008G082500 Sobic009G084900--Sobic004G260100
Octagon: transcription factors


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