Gene annotation
Transcriptome id Sobic.002G235200.2,Sobic.002G235200.3,Sobic.002G235200.4,Sobic.002G235200.6,Sobic.002G235200.5,Sobic.002G235200.7
Synonym Sb02g027390
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1W0W5H7 , A0A1W0W5J4 , A0A1W0W5M1 , A0A1W0W5P0 , A0A1W0W5G5 , A0A1W0W5G2
Pfam PF13812 PF01535 PF01535
Panther DB PTHR24015 PTHR24015:SF569
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76280 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os09g29790.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a047352
Brachypodium KQK01700 , KQJ81652 , PNT69555
Barley -
Wheat TraesCS4D02G309200 , TraesCS4A02G411400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
2 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
3 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
4 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
5 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
6 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
7 Sobic.003G036400 - K03254: translation initiation factor 3 subunit A
8 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
9 Sobic.004G224600 expressed protein -
10 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
11 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
12 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
13 Sobic.004G322400 WD40-like, putative, expressed -
14 Sobic.006G224800 expressed protein -
15 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
16 Sobic.008G124800 expressed protein -
17 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
18 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
19 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
20 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2


Gene co-expression network
sample Sobic002G235200 Sobic002G235200 Sobic006G086600 Sobic006G086600 Sobic002G235200--Sobic006G086600 Sobic001G089600 Sobic001G089600 Sobic002G235200--Sobic001G089600 Sobic001G145400 Sobic001G145400 Sobic002G235200--Sobic001G145400 Sobic010G059500 Sobic010G059500 Sobic002G235200--Sobic010G059500 Sobic003G146600 Sobic003G146600 Sobic002G235200--Sobic003G146600 Sobic006G166200 Sobic006G166200 Sobic002G235200--Sobic006G166200 Sobic003G036400 Sobic003G036400 Sobic002G235200--Sobic003G036400 Sobic004G320500 Sobic004G320500 Sobic002G235200--Sobic004G320500 Sobic004G224600 Sobic004G224600 Sobic002G235200--Sobic004G224600 Sobic010G003400 Sobic010G003400 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic009G101200 Sobic009G101200 Sobic006G086600--Sobic009G101200 Sobic001G453400 Sobic001G453400 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic001G493200 Sobic001G493200 Sobic010G059500--Sobic001G493200 Sobic003G308500 Sobic003G308500 Sobic003G146600--Sobic003G308500 Sobic003G146600--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic003G146600--Sobic006G002800 Sobic003G146600--Sobic002G235200 Sobic003G146600--Sobic001G145400 Sobic002G150700 Sobic002G150700 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G012000 Sobic003G012000 Sobic003G146600--Sobic003G012000 Sobic005G133800 Sobic005G133800 Sobic006G166200--Sobic005G133800 Sobic004G053500 Sobic004G053500 Sobic006G166200--Sobic004G053500 Sobic008G124800 Sobic008G124800 Sobic006G166200--Sobic008G124800 Sobic006G166200--Sobic003G405500 Sobic006G224800 Sobic006G224800 Sobic006G166200--Sobic006G224800 Sobic006G166200--Sobic001G145400 Sobic006G166200--Sobic010G059500 Sobic006G166200--Sobic002G235200 Sobic009G201700 Sobic009G201700 Sobic006G166200--Sobic009G201700 Sobic003G036400--Sobic002G235200 Sobic004G145000 Sobic004G145000 Sobic003G036400--Sobic004G145000 Sobic003G036400--Sobic004G320500 Sobic001G447300 Sobic001G447300 Sobic003G036400--Sobic001G447300 Sobic003G036400--Sobic002G150700 Sobic003G006400 Sobic003G006400 Sobic003G036400--Sobic003G006400 Sobic003G036400--Sobic001G145400 Sobic005G062200 Sobic005G062200 Sobic003G036400--Sobic005G062200 Sobic003G093800 Sobic003G093800 Sobic003G036400--Sobic003G093800 Sobic001G052400 Sobic001G052400 Sobic004G320500--Sobic001G052400 Sobic004G320500--Sobic006G086600 Sobic004G320500--Sobic004G340400 Sobic002G256700 Sobic002G256700 Sobic004G320500--Sobic002G256700 Sobic004G320500--Sobic001G493700 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600 Sobic004G224600--Sobic006G002800 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic006G125500 Sobic006G125500 Sobic004G224600--Sobic006G125500 Sobic004G224600--Sobic002G235200 Sobic009G246500 Sobic009G246500 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic004G224600--Sobic001G145400 Sobic004G224600--Sobic006G086600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.