Gene annotation
Transcriptome id Sobic.003G308500.1
Synonym ATVT-1, Sb03g035700, HVT1
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt C5XKY5
Pfam PF00270 PF01424 PF07717 PF00271 PF04408
Panther DB PTHR18934 PTHR18934:SF115
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT2G30800 : helicase in vascular tissue and tapetum
RAP-DB (Rice) LOC_Os01g56190.1 : HVT1, putative, expressed
MaizeGDB (Corn) Zm00025a039934
Brachypodium PNT72928
Barley HORVU3Hr1G074660.10 , HORVU3Hr1G074660.11 , HORVU3Hr1G074660.8 , HORVU3Hr1G074660.9 , HORVU3Hr1G074660.2 , HORVU3Hr1G074660.3 , HORVU3Hr1G074660.1 , HORVU3Hr1G074660.6 , HORVU3Hr1G074660.7 , HORVU3Hr1G074660.5 , HORVU3Hr1G074660.4
Wheat TraesCS3B02G337600 , TraesCS3B02G337600 , TraesCS3B02G337600 , TraesCS3D02G302800 , TraesCS3D02G302800 , TraesCS3D02G302800 , TraesCS3D02G302800 , TraesCS3D02G302800 , TraesCS3A02G298900 , TraesCS3A02G298900 , TraesCS3A02G298900
Populus -


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cDNA sequences
Sobic.003G308500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
2 Sobic.006G125500 expressed protein -
3 Sobic.003G296900 expressed protein -
4 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
5 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
6 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
7 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
8 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
9 Sobic.006G245900 FAR1 family protein, expressed -
10 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
11 Sobic.002G399800 PWWP domain containing protein, expressed -
12 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
13 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
14 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
15 Sobic.001G393900 FAD binding domain containing protein, expressed -
16 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
17 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
18 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.006G026250 - -
20 Sobic.004G224600 expressed protein -


Gene co-expression network
sample Sobic003G308500 Sobic003G308500 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic006G125500 Sobic006G125500 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic003G146600--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic003G146600--Sobic004G224600 Sobic003G146600--Sobic006G002800 Sobic002G235200 Sobic002G235200 Sobic003G146600--Sobic002G235200 Sobic003G146600--Sobic001G145400 Sobic002G150700 Sobic002G150700 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G146600--Sobic003G012000 Sobic006G125500--Sobic003G308500 Sobic006G125500--Sobic004G224600 Sobic006G125500--Sobic006G002800 Sobic006G125500--Sobic003G146600 Sobic006G125500--Sobic002G371600 Sobic010G080700 Sobic010G080700 Sobic006G125500--Sobic010G080700 Sobic004G332400 Sobic004G332400 Sobic006G125500--Sobic004G332400 Sobic007G155500 Sobic007G155500 Sobic006G125500--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic006G125500--Sobic005G010900 Sobic003G043000 Sobic003G043000 Sobic003G296900--Sobic003G043000 Sobic003G296900--Sobic001G065100 Sobic004G053500 Sobic004G053500 Sobic003G296900--Sobic004G053500 Sobic003G296900--Sobic003G308500 Sobic004G265500 Sobic004G265500 Sobic003G296900--Sobic004G265500 Sobic003G241700 Sobic003G241700 Sobic003G296900--Sobic003G241700 Sobic001G255800 Sobic001G255800 Sobic003G296900--Sobic001G255800 Sobic010G000800 Sobic010G000800 Sobic003G296900--Sobic010G000800 Sobic004G131300 Sobic004G131300 Sobic003G296900--Sobic004G131300 Sobic006G002800--Sobic003G308500 Sobic006G002800--Sobic004G224600 Sobic006G002800--Sobic002G150700 Sobic006G002800--Sobic001G145400 Sobic006G002800--Sobic003G146600 Sobic010G007100 Sobic010G007100 Sobic006G002800--Sobic010G007100 Sobic004G321700 Sobic004G321700 Sobic006G002800--Sobic004G321700 Sobic009G234700 Sobic009G234700 Sobic006G002800--Sobic009G234700 Sobic008G147200 Sobic008G147200 Sobic006G002800--Sobic008G147200 Sobic004G019200--Sobic003G308500 Sobic002G317200 Sobic002G317200 Sobic004G019200--Sobic002G317200 Sobic001G089600 Sobic001G089600 Sobic004G019200--Sobic001G089600 Sobic004G019200--Sobic001G145400 Sobic001G020000 Sobic001G020000 Sobic004G019200--Sobic001G020000 Sobic001G429600 Sobic001G429600 Sobic004G019200--Sobic001G429600 Sobic010G115400 Sobic010G115400 Sobic004G019200--Sobic010G115400 Sobic006G086600 Sobic006G086600 Sobic004G019200--Sobic006G086600 Sobic002G399800 Sobic002G399800 Sobic004G019200--Sobic002G399800 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic010G059500 Sobic010G059500 Sobic003G012000--Sobic010G059500 Sobic003G012000--Sobic003G308500 Sobic001G393900 Sobic001G393900 Sobic003G012000--Sobic001G393900 Sobic003G012000--Sobic003G146600 Sobic004G096400 Sobic004G096400 Sobic003G012000--Sobic004G096400 Sobic001G405600 Sobic001G405600 Sobic003G012000--Sobic001G405600 Sobic003G012000--Sobic003G043000 Sobic006G234700 Sobic006G234700 Sobic003G012000--Sobic006G234700 Sobic003G256800 Sobic003G256800 Sobic003G012000--Sobic003G256800 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic006G245900--Sobic002G371600 Sobic002G296400 Sobic002G296400 Sobic006G245900--Sobic002G296400 Sobic004G031300 Sobic004G031300 Sobic006G245900--Sobic004G031300 Sobic007G016900 Sobic007G016900 Sobic006G245900--Sobic007G016900 Sobic002G292800 Sobic002G292800 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic002G252100 Sobic002G252100 Sobic006G245900--Sobic002G252100 Sobic006G245900--Sobic003G308500 Sobic001G346900 Sobic001G346900 Sobic006G245900--Sobic001G346900
Octagon: transcription factors


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