Gene annotation
Transcriptome id Sobic.002G371600.1,Sobic.002G371600.4,Sobic.002G371600.2,Sobic.002G371600.3
Synonym Sb02g039030, emb1427
Functional annotation Spc97 / Spc98 family protein, putative, expressed
UniProt A0A1B6QFG3 , A0A1B6QFG4 , A0A1B6QFH2
Pfam PF04130
Panther DB PTHR19302 PTHR19302:SF33
NCBI CDD -
KEGG Orthology K16572; TUBGCP5, gamma-tubulin complex component 5
Gene Ontology GO:0005815; microtubule organizing center GO:0000922spindle pole GO:0000226microtubule cytoskeleton organization


Orthologs (automatic annotation)
TAIR AT1G80260 : Spc97 / Spc98 family of spindle pole body (SBP) component
RAP-DB (Rice) LOC_Os02g32340.1 : Spc97 / Spc98 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048731
Brachypodium KQJ85979 , KQJ85978 , PNT70924
Barley HORVU3Hr1G107700.23 , HORVU3Hr1G107700.22 , HORVU3Hr1G107700.21 , HORVU3Hr1G107700.20 , HORVU5Hr1G015110.3 , HORVU5Hr1G015110.2 , HORVU5Hr1G015110.1 , HORVU3Hr1G107640.1 , HORVU3Hr1G107640.3 , HORVU3Hr1G107640.2 , HORVU3Hr1G107630.3 , HORVU3Hr1G107700.12 , HORVU3Hr1G107700.13 , HORVU3Hr1G107700.10 , HORVU3Hr1G107700.11 , HORVU3Hr1G107700.18 , HORVU3Hr1G107700.19 , HORVU3Hr1G107700.4 , HORVU3Hr1G107700.5 , HORVU3Hr1G107700.6 , HORVU3Hr1G107700.7 , HORVU3Hr1G107700.1 , HORVU3Hr1G107700.2 , HORVU3Hr1G107700.3 , HORVU3Hr1G107700.8 , HORVU3Hr1G107700.9 , HORVU3Hr1G107700.16 , HORVU3Hr1G107700.17 , HORVU3Hr1G107700.14 , HORVU3Hr1G107700.15
Wheat TraesCS5A02G059900 , TraesCS5A02G059900 , TraesCS5D02G071400 , TraesCS5D02G071400 , TraesCS5B02G067200 , TraesCS5B02G067200 , TraesCS2D02G096700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
2 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
3 Sobic.006G245900 FAR1 family protein, expressed -
4 Sobic.004G356200 expressed protein -
5 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
6 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
7 Sobic.003G052800 RST1, putative, expressed -
8 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
9 Sobic.010G262100 expressed protein -
10 Sobic.003G309050 - -
11 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
12 Sobic.003G388000 tetratricopeptide repeat domain containing protein, expressed K03350: APC3, anaphase-promoting complex subunit 3
13 Sobic.006G125500 expressed protein -
14 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
15 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
16 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
17 Sobic.007G145400 expressed protein -
18 Sobic.002G363800 expressed protein -
19 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
20 Sobic.003G217200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic002G371600 Sobic002G371600 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic001G373800--Sobic002G371600 Sobic005G010900 Sobic005G010900 Sobic001G373800--Sobic005G010900 Sobic006G033101 Sobic006G033101 Sobic001G373800--Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic001G373800--Sobic004G038100 Sobic001G373800--Sobic006G029100 Sobic006G181800 Sobic006G181800 Sobic001G373800--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic001G373800--Sobic001G373000 Sobic001G373800--Sobic001G451300 Sobic009G104900 Sobic009G104900 Sobic001G373800--Sobic009G104900 Sobic006G029100--Sobic002G371600 Sobic006G029100--Sobic002G160700 Sobic002G386600 Sobic002G386600 Sobic006G029100--Sobic002G386600 Sobic004G141800 Sobic004G141800 Sobic006G029100--Sobic004G141800 Sobic003G256800 Sobic003G256800 Sobic006G029100--Sobic003G256800 Sobic006G029100--Sobic003G308500 Sobic006G029100--Sobic001G373800 Sobic001G200200 Sobic001G200200 Sobic006G029100--Sobic001G200200 Sobic010G070600 Sobic010G070600 Sobic006G029100--Sobic010G070600 Sobic006G245900--Sobic002G371600 Sobic002G296400 Sobic002G296400 Sobic006G245900--Sobic002G296400 Sobic004G031300 Sobic004G031300 Sobic006G245900--Sobic004G031300 Sobic007G016900 Sobic007G016900 Sobic006G245900--Sobic007G016900 Sobic002G292800 Sobic002G292800 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic002G252100 Sobic002G252100 Sobic006G245900--Sobic002G252100 Sobic006G245900--Sobic003G308500 Sobic001G346900 Sobic001G346900 Sobic006G245900--Sobic001G346900 Sobic004G356200--Sobic001G200200 Sobic004G356200--Sobic002G371600 Sobic005G031000 Sobic005G031000 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G030400 Sobic004G030400 Sobic004G356200--Sobic004G030400 Sobic001G085800 Sobic001G085800 Sobic004G356200--Sobic001G085800 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic006G125500 Sobic006G125500 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic003G308500--Sobic006G245900 Sobic001G151600 Sobic001G151600 Sobic002G160700--Sobic001G151600 Sobic002G160700--Sobic002G371600 Sobic002G160700--Sobic006G029100 Sobic002G160700--Sobic001G248100 Sobic006G265600 Sobic006G265600 Sobic002G160700--Sobic006G265600 Sobic002G199400 Sobic002G199400 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic002G160700--Sobic004G030400 Sobic005G115500 Sobic005G115500 Sobic002G160700--Sobic005G115500 Sobic006G269800 Sobic006G269800 Sobic003G052800--Sobic006G269800 Sobic002G145800 Sobic002G145800 Sobic003G052800--Sobic002G145800 Sobic002G430300 Sobic002G430300 Sobic003G052800--Sobic002G430300 Sobic003G052800--Sobic002G371600 Sobic002G372500 Sobic002G372500 Sobic003G052800--Sobic002G372500 Sobic001G051700 Sobic001G051700 Sobic003G052800--Sobic001G051700 Sobic002G043100 Sobic002G043100 Sobic003G052800--Sobic002G043100 Sobic010G174700 Sobic010G174700 Sobic003G052800--Sobic010G174700 Sobic003G217200 Sobic003G217200 Sobic003G052800--Sobic003G217200 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic001G451300--Sobic010G174700 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic002G399800 Sobic002G399800 Sobic001G451300--Sobic002G399800 Sobic010G262100--Sobic001G451300 Sobic010G262100--Sobic010G138900 Sobic010G262100--Sobic001G248100 Sobic008G080500 Sobic008G080500 Sobic010G262100--Sobic008G080500 Sobic010G262100--Sobic002G043100 Sobic010G262100--Sobic002G399800 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.