Gene annotation
Transcriptome id Sobic.003G217200.1
Synonym Sb03g027610
Functional annotation endonuclease/exonuclease/phosphatase family domain containing protein, expressed
UniProt C5XQY7
Pfam PF03372
Panther DB PTHR12121 PTHR12121:SF48
NCBI CDD KOG0620; Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11350 : DNAse I-like superfamily protein
RAP-DB (Rice) LOC_Os01g42490.1 : endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK08678 , KQK08679 , KQK08677 , KQK08680
Barley -
Wheat TraesCS3B02G248600 , TraesCS3B02G248600 , TraesCS3B02G248600 , TraesCS3D02G233900 , TraesCS3D02G233900 , TraesCS3D02G233900 , TraesCS3D02G233900 , TraesCS3A02G218500 , TraesCS3A02G218500 , TraesCS3A02G218500 , TraesCS3A02G218500
Populus -


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cDNA sequences
Sobic.003G217200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G542450 - -
2 Sobic.003G052800 RST1, putative, expressed -
3 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
4 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
5 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
6 Sobic.008G088875 - -
7 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
8 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
9 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
10 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
11 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
12 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
13 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
14 Sobic.005G108000 - -
15 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
16 Sobic.010G057500 expressed protein K11138: telomere-associated protein RIF1
17 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
18 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
19 Sobic.010G027900 - -
20 Sobic.003G312700 glycosyl hydrolase family 47 domain contain protein, expressed K10085: ER degradation enhancer, mannosidase alpha-like 2


Gene co-expression network
sample Sobic003G217200 Sobic003G217200 Sobic001G542450 Sobic001G542450 Sobic003G217200--Sobic001G542450 Sobic003G052800 Sobic003G052800 Sobic003G217200--Sobic003G052800 Sobic002G371600 Sobic002G371600 Sobic003G217200--Sobic002G371600 Sobic006G269800 Sobic006G269800 Sobic003G217200--Sobic006G269800 Sobic002G374300 Sobic002G374300 Sobic003G217200--Sobic002G374300 Sobic008G088875 Sobic008G088875 Sobic003G217200--Sobic008G088875 Sobic001G087600 Sobic001G087600 Sobic003G217200--Sobic001G087600 Sobic001G346900 Sobic001G346900 Sobic003G217200--Sobic001G346900 Sobic002G372500 Sobic002G372500 Sobic003G217200--Sobic002G372500 Sobic008G002300 Sobic008G002300 Sobic001G542450--Sobic008G002300 Sobic003G416700 Sobic003G416700 Sobic001G542450--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G542450--Sobic002G145800 Sobic001G542450--Sobic003G217200 Sobic003G062300 Sobic003G062300 Sobic001G542450--Sobic003G062300 Sobic006G224800 Sobic006G224800 Sobic001G542450--Sobic006G224800 Sobic002G295500 Sobic002G295500 Sobic001G542450--Sobic002G295500 Sobic001G461400 Sobic001G461400 Sobic001G542450--Sobic001G461400 Sobic006G166200 Sobic006G166200 Sobic001G542450--Sobic006G166200 Sobic003G052800--Sobic006G269800 Sobic003G052800--Sobic002G145800 Sobic002G430300 Sobic002G430300 Sobic003G052800--Sobic002G430300 Sobic003G052800--Sobic002G371600 Sobic003G052800--Sobic002G372500 Sobic001G051700 Sobic001G051700 Sobic003G052800--Sobic001G051700 Sobic002G043100 Sobic002G043100 Sobic003G052800--Sobic002G043100 Sobic010G174700 Sobic010G174700 Sobic003G052800--Sobic010G174700 Sobic003G052800--Sobic003G217200 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic006G269800--Sobic002G145800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic003G363700 Sobic003G363700 Sobic002G374300--Sobic003G363700 Sobic003G043000 Sobic003G043000 Sobic002G374300--Sobic003G043000 Sobic002G374300--Sobic001G542450 Sobic003G012000 Sobic003G012000 Sobic002G374300--Sobic003G012000 Sobic002G154000 Sobic002G154000 Sobic002G374300--Sobic002G154000 Sobic001G151100 Sobic001G151100 Sobic002G374300--Sobic001G151100 Sobic004G209700 Sobic004G209700 Sobic002G374300--Sobic004G209700 Sobic002G374300--Sobic001G393900 Sobic002G371700 Sobic002G371700 Sobic002G374300--Sobic002G371700 Sobic003G188400 Sobic003G188400 Sobic008G088875--Sobic003G188400 Sobic004G340400 Sobic004G340400 Sobic008G088875--Sobic004G340400 Sobic008G088875--Sobic002G145800 Sobic008G088875--Sobic001G461400 Sobic008G088875--Sobic003G217200 Sobic008G063300 Sobic008G063300 Sobic008G088875--Sobic008G063300 Sobic008G088875--Sobic002G371700 Sobic010G007100 Sobic010G007100 Sobic008G088875--Sobic010G007100 Sobic010G237900 Sobic010G237900 Sobic008G088875--Sobic010G237900 Sobic001G087600--Sobic001G151100 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic001G087600--Sobic002G145800 Sobic001G087600--Sobic002G154000 Sobic001G087600--Sobic003G416700 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic001G087600--Sobic002G371700 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic001G429600 Sobic001G429600 Sobic002G372500--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic002G372500--Sobic001G461300 Sobic002G372500--Sobic003G052800 Sobic001G373000 Sobic001G373000 Sobic002G372500--Sobic001G373000 Sobic002G372500--Sobic006G269800 Sobic002G372500--Sobic001G451300 Sobic002G372500--Sobic010G174700 Sobic002G372500--Sobic008G147200 Sobic003G199300 Sobic003G199300 Sobic002G372500--Sobic003G199300
Octagon: transcription factors


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