Gene annotation
Transcriptome id Sobic.001G461300.2
Synonym GRP23, Sb01g043290
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5SAT8
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF393
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10270 : glutamine-rich protein 23
RAP-DB (Rice) LOC_Os05g30240.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a006839
Brachypodium KQK16982 , KQK10479
Barley HORVU2Hr1G011400.2 , HORVU2Hr1G011400.1 , HORVU2Hr1G011350.4 , HORVU2Hr1G011350.2 , HORVU2Hr1G011350.3 , HORVU2Hr1G011350.1
Wheat TraesCS2A02G063500 , TraesCS2A02G524300 , TraesCS2B02G554300 , TraesCS2B02G076200 , TraesCS2D02G527300
Populus -


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cDNA sequences
Sobic.001G461300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
2 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
3 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
4 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
5 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
6 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
7 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
8 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
9 Sobic.004G224600 expressed protein -
10 Sobic.004G356200 expressed protein -
11 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
12 Sobic.008G147200 tubulin, putative, expressed -
13 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
14 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
15 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
16 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
17 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
18 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
19 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
20 Sobic.003G217200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic001G461300 Sobic001G461300 Sobic002G372500 Sobic002G372500 Sobic001G461300--Sobic002G372500 Sobic006G193300 Sobic006G193300 Sobic001G461300--Sobic006G193300 Sobic001G408600 Sobic001G408600 Sobic001G461300--Sobic001G408600 Sobic006G002800 Sobic006G002800 Sobic001G461300--Sobic006G002800 Sobic009G234700 Sobic009G234700 Sobic001G461300--Sobic009G234700 Sobic002G371600 Sobic002G371600 Sobic001G461300--Sobic002G371600 Sobic007G089800 Sobic007G089800 Sobic001G461300--Sobic007G089800 Sobic001G373000 Sobic001G373000 Sobic001G461300--Sobic001G373000 Sobic004G224600 Sobic004G224600 Sobic001G461300--Sobic004G224600 Sobic001G429600 Sobic001G429600 Sobic002G372500--Sobic001G429600 Sobic002G372500--Sobic001G461300 Sobic003G052800 Sobic003G052800 Sobic002G372500--Sobic003G052800 Sobic002G372500--Sobic001G373000 Sobic006G269800 Sobic006G269800 Sobic002G372500--Sobic006G269800 Sobic001G451300 Sobic001G451300 Sobic002G372500--Sobic001G451300 Sobic010G174700 Sobic010G174700 Sobic002G372500--Sobic010G174700 Sobic008G147200 Sobic008G147200 Sobic002G372500--Sobic008G147200 Sobic003G199300 Sobic003G199300 Sobic002G372500--Sobic003G199300 Sobic004G340400 Sobic004G340400 Sobic006G193300--Sobic004G340400 Sobic006G193300--Sobic001G429600 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic008G049100 Sobic008G049100 Sobic006G193300--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic006G193300--Sobic009G246500 Sobic006G125900 Sobic006G125900 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic006G193300--Sobic003G199300 Sobic003G246000 Sobic003G246000 Sobic001G408600--Sobic003G246000 Sobic001G408600--Sobic001G373000 Sobic001G408600--Sobic001G461300 Sobic001G408600--Sobic007G089800 Sobic001G004100 Sobic001G004100 Sobic001G408600--Sobic001G004100 Sobic001G408600--Sobic006G125900 Sobic009G211200 Sobic009G211200 Sobic001G408600--Sobic009G211200 Sobic001G408600--Sobic006G002800 Sobic001G145400 Sobic001G145400 Sobic001G408600--Sobic001G145400 Sobic003G308500 Sobic003G308500 Sobic006G002800--Sobic003G308500 Sobic006G002800--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic006G002800--Sobic002G150700 Sobic006G002800--Sobic001G145400 Sobic003G146600 Sobic003G146600 Sobic006G002800--Sobic003G146600 Sobic010G007100 Sobic010G007100 Sobic006G002800--Sobic010G007100 Sobic004G321700 Sobic004G321700 Sobic006G002800--Sobic004G321700 Sobic006G002800--Sobic009G234700 Sobic006G002800--Sobic008G147200 Sobic004G256500 Sobic004G256500 Sobic009G234700--Sobic004G256500 Sobic004G131300 Sobic004G131300 Sobic009G234700--Sobic004G131300 Sobic009G234700--Sobic001G145400 Sobic004G053500 Sobic004G053500 Sobic009G234700--Sobic004G053500 Sobic009G234700--Sobic006G002800 Sobic002G371700 Sobic002G371700 Sobic009G234700--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic009G234700--Sobic003G046300 Sobic005G172500 Sobic005G172500 Sobic009G234700--Sobic005G172500 Sobic001G455800 Sobic001G455800 Sobic009G234700--Sobic001G455800 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic007G089800--Sobic001G373000 Sobic007G089800--Sobic006G002800 Sobic007G089800--Sobic001G408600 Sobic004G315500 Sobic004G315500 Sobic007G089800--Sobic004G315500 Sobic010G188000 Sobic010G188000 Sobic007G089800--Sobic010G188000 Sobic007G089800--Sobic001G461300 Sobic007G089800--Sobic006G193300 Sobic010G205900 Sobic010G205900 Sobic007G089800--Sobic010G205900 Sobic010G186600 Sobic010G186600 Sobic007G089800--Sobic010G186600 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic004G224600--Sobic006G002800 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic006G125500 Sobic006G125500 Sobic004G224600--Sobic006G125500 Sobic002G235200 Sobic002G235200 Sobic004G224600--Sobic002G235200 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600
Octagon: transcription factors


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