Gene annotation
Transcriptome id Sobic.004G340400.1
Synonym Sb04g036790
Functional annotation translation initiation factor eIF-2B subunit epsilon, putative, expressed
UniProt C5XV89 , C6JRY9
Pfam PF00132 PF00483 PF02020
Panther DB PTHR22572 PTHR22572:SF7
NCBI CDD -
KEGG Orthology K03240; translation initiation factor eIF-2B subunit epsilon
Gene Ontology GO:0016779; nucleotidyltransferase activity GO:0009058biosynthetic process GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G34970 : Trimeric LpxA-like enzyme
RAP-DB (Rice) LOC_Os02g56740.1 : translation initiation factor eIF-2B subunit epsilon, putative, expressed
MaizeGDB (Corn) Zm00025a022557
Brachypodium KQK01293 , KQK01295 , KQK01294
Barley HORVU5Hr1G019940.26 , HORVU5Hr1G019940.25 , HORVU5Hr1G019940.24 , HORVU5Hr1G019940.23 , HORVU5Hr1G019940.22 , HORVU5Hr1G019940.21 , HORVU5Hr1G019940.20 , HORVU6Hr1G051990.23 , HORVU5Hr1G019940.4 , HORVU5Hr1G019940.5 , HORVU5Hr1G019940.6 , HORVU5Hr1G019940.7 , HORVU5Hr1G019940.1 , HORVU5Hr1G019940.2 , HORVU5Hr1G019940.3 , HORVU5Hr1G019940.8 , HORVU5Hr1G019940.9 , HORVU6Hr1G051990.27 , HORVU5Hr1G019940.16 , HORVU5Hr1G019940.17 , HORVU5Hr1G019940.14 , HORVU5Hr1G019940.15 , HORVU5Hr1G019940.12 , HORVU5Hr1G019940.13 , HORVU5Hr1G019940.10 , HORVU5Hr1G019940.11 , HORVU5Hr1G019940.18 , HORVU5Hr1G019940.19 , HORVU6Hr1G051990.7 , HORVU6Hr1G089470.2 , HORVU6Hr1G089470.3 , HORVU6Hr1G089470.1 , HORVU6Hr1G089470.7 , HORVU6Hr1G089470.4 , HORVU6Hr1G089470.5 , HORVU6Hr1G051990.17 , HORVU6Hr1G051990.8 , HORVU6Hr1G051990.14 , HORVU6Hr1G051990.12
Wheat TraesCS6D02G366500 , TraesCS6B02G421000 , TraesCS6B02G421000 , TraesCS5B02G081200 , TraesCS5B02G081200 , TraesCS5B02G081200 , TraesCS5A02G074800 , TraesCS6A02G381800 , TraesCS5A02G074800 , TraesCS5D02G088300 , TraesCS5D02G088300 , TraesCS5D02G088300 , TraesCS5D02G088300 , TraesCS5D02G088300 , TraesCS5D02G088300 , TraesCS6D02G366500 , TraesCS6D02G366500 , TraesCS6D02G366500 , TraesCS6D02G366500 , TraesCS5A02G074800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
2 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
3 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
4 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
5 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
7 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
8 Sobic.004G145000 importin-8, putative, expressed -
9 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
10 Sobic.008G147200 tubulin, putative, expressed -
11 Sobic.009G016400 RNA recognition motif containing protein, expressed -
12 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
13 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
14 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
15 Sobic.004G126000 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K18914: adrenodoxin-NADP+ reductase
16 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
17 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
18 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
19 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
20 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1


Gene co-expression network
sample Sobic004G340400 Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic001G291800--Sobic004G340400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic004G320500--Sobic001G052400 Sobic004G320500--Sobic006G086600 Sobic004G320500--Sobic004G340400 Sobic002G256700 Sobic002G256700 Sobic004G320500--Sobic002G256700 Sobic001G493700 Sobic001G493700 Sobic004G320500--Sobic001G493700 Sobic001G089600 Sobic001G089600 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic010G003400 Sobic010G003400 Sobic004G320500--Sobic010G003400 Sobic004G320500--Sobic009G255600 Sobic010G007100--Sobic001G145400 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic010G007100--Sobic006G077200 Sobic002G235200 Sobic002G235200 Sobic010G007100--Sobic002G235200 Sobic006G002800 Sobic006G002800 Sobic010G007100--Sobic006G002800 Sobic003G042400 Sobic003G042400 Sobic010G007100--Sobic003G042400 Sobic008G160000--Sobic004G340400 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic001G052400--Sobic004G320500 Sobic001G052400--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic001G052400--Sobic003G042400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic006G125900 Sobic006G125900 Sobic001G052400--Sobic006G125900 Sobic001G455800--Sobic009G016400 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic001G455800--Sobic002G142900 Sobic001G455800--Sobic008G160000 Sobic001G455800--Sobic001G145400 Sobic006G139100 Sobic006G139100 Sobic004G145000--Sobic006G139100 Sobic004G145000--Sobic004G340400 Sobic006G034500 Sobic006G034500 Sobic004G145000--Sobic006G034500 Sobic004G145000--Sobic001G447300 Sobic004G145000--Sobic001G455800 Sobic004G145000--Sobic002G256700 Sobic003G036400 Sobic003G036400 Sobic004G145000--Sobic003G036400 Sobic003G104000 Sobic003G104000 Sobic004G145000--Sobic003G104000 Sobic006G166200 Sobic006G166200 Sobic004G145000--Sobic006G166200 Sobic001G401500--Sobic004G340400 Sobic001G401500--Sobic001G259000 Sobic001G401500--Sobic010G007100 Sobic009G211200 Sobic009G211200 Sobic001G401500--Sobic009G211200 Sobic001G244300 Sobic001G244300 Sobic001G401500--Sobic001G244300 Sobic006G193300 Sobic006G193300 Sobic001G401500--Sobic006G193300 Sobic009G101200 Sobic009G101200 Sobic001G401500--Sobic009G101200 Sobic010G055700 Sobic010G055700 Sobic001G401500--Sobic010G055700 Sobic001G401500--Sobic006G086600
Octagon: transcription factors


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