Gene annotation
Transcriptome id Sobic.004G320500.1
Synonym Sb04g035090
Functional annotation expressed protein
UniProt A0A194YSL4
Pfam PF08161
Panther DB PTHR21576 PTHR21576:SF2
NCBI CDD KOG1248; Uncharacterized conserved protein
KEGG Orthology K14794; ribosomal RNA-processing protein 12
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34357 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os02g54110.1 : expressed protein
MaizeGDB (Corn) Zm00025a021545 , Zm00025a022370
Brachypodium KQK02054 , KQK02055
Barley HORVU6Hr1G082340.3 , HORVU6Hr1G082340.2 , HORVU6Hr1G082340.4 , HORVU6Hr1G082340.1 , HORVU6Hr1G082340.7 , HORVU6Hr1G082340.6
Wheat TraesCS6B02G373300 , TraesCS6A02G341700 , TraesCS6D02G321900
Populus -


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cDNA sequences
Sobic.004G320500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
2 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
3 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
4 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
5 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
6 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
7 Sobic.010G102600 pentatricopeptide, putative, expressed -
8 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
9 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
10 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
11 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
12 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
13 Sobic.003G036400 - K03254: translation initiation factor 3 subunit A
14 Sobic.004G332400 neurochondrin family protein, putative, expressed -
15 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
16 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
17 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
18 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
19 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
20 Sobic.001G191700 expressed protein -


Gene co-expression network
sample Sobic004G320500 Sobic004G320500 Sobic001G052400 Sobic001G052400 Sobic004G320500--Sobic001G052400 Sobic006G086600 Sobic006G086600 Sobic004G320500--Sobic006G086600 Sobic004G340400 Sobic004G340400 Sobic004G320500--Sobic004G340400 Sobic002G256700 Sobic002G256700 Sobic004G320500--Sobic002G256700 Sobic001G493700 Sobic001G493700 Sobic004G320500--Sobic001G493700 Sobic001G089600 Sobic001G089600 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic010G003400 Sobic010G003400 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600 Sobic001G052400--Sobic004G320500 Sobic001G052400--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic003G042400 Sobic003G042400 Sobic001G052400--Sobic003G042400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic006G125900 Sobic006G125900 Sobic001G052400--Sobic006G125900 Sobic006G086600--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic009G101200 Sobic009G101200 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G340400--Sobic004G320500 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic003G104000 Sobic003G104000 Sobic002G256700--Sobic003G104000 Sobic002G256700--Sobic001G493700 Sobic007G054800 Sobic007G054800 Sobic002G256700--Sobic007G054800 Sobic001G251100 Sobic001G251100 Sobic002G256700--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic002G256700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G256700--Sobic004G131300 Sobic006G280000 Sobic006G280000 Sobic002G256700--Sobic006G280000 Sobic002G133300 Sobic002G133300 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic005G162500 Sobic005G162500 Sobic001G493700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic009G131300 Sobic009G131300 Sobic001G493700--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic001G493700--Sobic002G429300 Sobic002G042600 Sobic002G042600 Sobic001G493700--Sobic002G042600 Sobic002G335600 Sobic002G335600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic008G014801 Sobic008G014801 Sobic010G102600--Sobic008G014801 Sobic010G102600--Sobic001G089600 Sobic010G102600--Sobic004G320500 Sobic010G102600--Sobic001G453400 Sobic010G102600--Sobic001G493700 Sobic005G122700 Sobic005G122700 Sobic010G102600--Sobic005G122700 Sobic010G102600--Sobic010G115400 Sobic010G102600--Sobic010G003400 Sobic003G166750 Sobic003G166750 Sobic010G102600--Sobic003G166750 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic010G186600 Sobic010G186600 Sobic009G255600--Sobic010G186600 Sobic003G416700 Sobic003G416700 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic002G029100 Sobic002G029100 Sobic009G255600--Sobic002G029100 Sobic009G255600--Sobic003G042400 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400
Octagon: transcription factors


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