Gene annotation
Transcriptome id Sobic.010G003400.1
Synonym Sb10g000500
Functional annotation -
UniProt C5Z244
Pfam PF00271 PF00270 PF08148 PF13234
Panther DB -
NCBI CDD -
KEGG Orthology K12598; MTR4, ATP-dependent RNA helicase DOB1
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G59760 : RNA helicase, ATP-dependent, SK12/DOB1 protein
RAP-DB (Rice) LOC_Os12g18140.1 : superkiller viralicidic activity 2-like 2, putative, expressed
MaizeGDB (Corn) Zm00025a050319
Brachypodium KQK20064 , KQK20065
Barley HORVU1Hr1G018080.8 , HORVU1Hr1G018080.9 , HORVU1Hr1G018080.2 , HORVU1Hr1G018080.3 , HORVU1Hr1G018080.1 , HORVU1Hr1G018080.6 , HORVU1Hr1G018080.4 , HORVU1Hr1G018080.5 , HORVU1Hr1G018080.18 , HORVU1Hr1G018080.19 , HORVU1Hr1G018080.10 , HORVU1Hr1G018080.11 , HORVU1Hr1G018080.13 , HORVU1Hr1G018080.15 , HORVU1Hr1G018080.16 , HORVU1Hr1G018080.17 , HORVU6Hr1G093760.1 , HORVU1Hr1G018080.29 , HORVU1Hr1G018080.28 , HORVU1Hr1G018080.25 , HORVU1Hr1G018080.24 , HORVU1Hr1G018080.27 , HORVU1Hr1G018080.26 , HORVU1Hr1G018080.21 , HORVU1Hr1G018080.20 , HORVU1Hr1G018080.23 , HORVU1Hr1G018080.22 , HORVU1Hr1G048420.1 , HORVU1Hr1G048420.2 , HORVU1Hr1G018080.14 , HORVU7Hr1G001080.6 , HORVU7Hr1G001080.7 , HORVU7Hr1G001080.4 , HORVU7Hr1G001080.5 , HORVU7Hr1G001080.2 , HORVU7Hr1G001080.3 , HORVU7Hr1G001080.1 , HORVU7Hr1G001080.8 , HORVU7Hr1G001080.9 , HORVU1Hr1G018080.32 , HORVU1Hr1G018080.33 , HORVU1Hr1G018080.30 , HORVU1Hr1G018080.36 , HORVU1Hr1G018080.37 , HORVU1Hr1G018080.34 , HORVU1Hr1G018080.35 , HORVU1Hr1G018080.38 , HORVU1Hr1G018080.39 , HORVU1Hr1G018080.31 , HORVU6Hr1G093760.2
Wheat TraesCS7D02G010500 , TraesCS7A02G010800 , TraesCS4A02G484300 , TraesCS4A02G484300
Populus PNT42733 , PNT42734 , PNT30373 , PNT30372 , PNT30371 , PNT30370


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
2 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
3 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
4 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
5 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
6 Sobic.001G004400 - K14290: XPO1, exportin-1
7 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
8 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
9 Sobic.004G030800 expressed protein -
10 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
11 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
12 Sobic.010G114900 expressed protein -
13 Sobic.002G373950 - -
14 Sobic.010G055700 tetratricopeptide repeat domain containing protein, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
15 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
16 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
17 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
18 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
19 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
20 Sobic.003G171500 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic010G003400 Sobic010G003400 Sobic006G086600 Sobic006G086600 Sobic010G003400--Sobic006G086600 Sobic001G453400 Sobic001G453400 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic006G086600--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic001G052400--Sobic004G320500 Sobic001G052400--Sobic010G003400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic003G042400 Sobic003G042400 Sobic001G052400--Sobic003G042400 Sobic004G340400 Sobic004G340400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic001G052400--Sobic006G125900 Sobic009G101200--Sobic006G086600 Sobic009G101200--Sobic010G003400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic004G085000 Sobic004G085000 Sobic009G101200--Sobic004G085000 Sobic009G101200--Sobic001G052400 Sobic009G246500 Sobic009G246500 Sobic009G101200--Sobic009G246500 Sobic001G429600 Sobic001G429600 Sobic009G101200--Sobic001G429600 Sobic006G049600 Sobic006G049600 Sobic009G101200--Sobic006G049600 Sobic010G079500 Sobic010G079500 Sobic003G260400--Sobic010G079500 Sobic003G095900 Sobic003G095900 Sobic003G260400--Sobic003G095900 Sobic002G399800 Sobic002G399800 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic003G260400--Sobic002G316600 Sobic003G260400--Sobic010G003400 Sobic003G260400--Sobic001G089600 Sobic003G260400--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic003G260400--Sobic001G393900 Sobic002G133300 Sobic002G133300 Sobic001G004400--Sobic002G133300 Sobic001G110600 Sobic001G110600 Sobic001G004400--Sobic001G110600 Sobic007G054800 Sobic007G054800 Sobic001G004400--Sobic007G054800 Sobic004G248600 Sobic004G248600 Sobic001G004400--Sobic004G248600 Sobic003G312100 Sobic003G312100 Sobic001G004400--Sobic003G312100 Sobic001G493700 Sobic001G493700 Sobic001G004400--Sobic001G493700 Sobic003G221400 Sobic003G221400 Sobic001G004400--Sobic003G221400 Sobic004G276400 Sobic004G276400 Sobic001G004400--Sobic004G276400 Sobic002G179400 Sobic002G179400 Sobic001G004400--Sobic002G179400 Sobic004G320500--Sobic001G052400 Sobic004G320500--Sobic006G086600 Sobic004G320500--Sobic004G340400 Sobic002G256700 Sobic002G256700 Sobic004G320500--Sobic002G256700 Sobic004G320500--Sobic001G493700 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600 Sobic001G089600--Sobic003G095900 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic004G030800--Sobic010G003400 Sobic004G030800--Sobic001G052400 Sobic004G025800 Sobic004G025800 Sobic004G030800--Sobic004G025800 Sobic008G051200 Sobic008G051200 Sobic004G030800--Sobic008G051200 Sobic007G075800 Sobic007G075800 Sobic004G030800--Sobic007G075800 Sobic004G030800--Sobic003G260400 Sobic004G030800--Sobic009G101200 Sobic010G053600 Sobic010G053600 Sobic004G030800--Sobic010G053600 Sobic004G030800--Sobic001G004400
Octagon: transcription factors


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