Gene annotation
Transcriptome id Sobic.002G373950.1
Synonym -
Functional annotation -
UniProt A0A1W0W7D3
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF280
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39710 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g42354.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015200 , Zm00025a015203 , Zm00025a015199
Brachypodium PNT74768 , PNT74769 , PNT74765 , PNT74766 , PNT74767 , KQK15262 , KQK15261 , KQK15260 , PNT74770
Barley -
Wheat TraesCS2D02G177000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
2 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
3 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
4 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
5 Sobic.010G174700 expressed protein -
6 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
7 Sobic.010G115400 pentatricopeptide, putative, expressed -
8 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
9 Sobic.010G102600 pentatricopeptide, putative, expressed -
10 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
11 Sobic.007G220300 WD domain, G-beta repeat domain containing protein, expressed K11374: elongator complex protein 2
12 Sobic.001G393900 FAD binding domain containing protein, expressed -
13 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
14 Sobic.003G445500 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
15 Sobic.005G122700 PPR repeat domain containing protein, putative, expressed -
16 Sobic.008G016300 expressed protein -
17 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
18 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
19 Sobic.004G030800 expressed protein -
20 Sobic.007G225000 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter


Gene co-expression network
sample Sobic002G373950 Sobic002G373950 Sobic006G086600 Sobic006G086600 Sobic002G373950--Sobic006G086600 Sobic010G003400 Sobic010G003400 Sobic002G373950--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic002G373950--Sobic001G453400 Sobic009G213200 Sobic009G213200 Sobic002G373950--Sobic009G213200 Sobic010G174700 Sobic010G174700 Sobic002G373950--Sobic010G174700 Sobic003G260400 Sobic003G260400 Sobic002G373950--Sobic003G260400 Sobic010G115400 Sobic010G115400 Sobic002G373950--Sobic010G115400 Sobic001G089600 Sobic001G089600 Sobic002G373950--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic002G373950--Sobic010G102600 Sobic006G086600--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic009G101200 Sobic009G101200 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic004G320500 Sobic004G320500 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic010G003400--Sobic009G101200 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic006G185200 Sobic006G185200 Sobic009G213200--Sobic006G185200 Sobic002G378100 Sobic002G378100 Sobic009G213200--Sobic002G378100 Sobic007G097400 Sobic007G097400 Sobic009G213200--Sobic007G097400 Sobic001G214600 Sobic001G214600 Sobic009G213200--Sobic001G214600 Sobic009G213200--Sobic002G373950 Sobic010G147833 Sobic010G147833 Sobic009G213200--Sobic010G147833 Sobic005G160100 Sobic005G160100 Sobic009G213200--Sobic005G160100 Sobic006G231800 Sobic006G231800 Sobic009G213200--Sobic006G231800 Sobic009G251200 Sobic009G251200 Sobic009G213200--Sobic009G251200 Sobic006G036100 Sobic006G036100 Sobic010G174700--Sobic006G036100 Sobic001G352900 Sobic001G352900 Sobic010G174700--Sobic001G352900 Sobic010G174700--Sobic001G089600 Sobic010G174700--Sobic001G052400 Sobic002G145800 Sobic002G145800 Sobic010G174700--Sobic002G145800 Sobic001G451300 Sobic001G451300 Sobic010G174700--Sobic001G451300 Sobic010G053600 Sobic010G053600 Sobic010G174700--Sobic010G053600 Sobic010G174700--Sobic001G453400 Sobic005G220000 Sobic005G220000 Sobic010G174700--Sobic005G220000 Sobic010G079500 Sobic010G079500 Sobic003G260400--Sobic010G079500 Sobic003G095900 Sobic003G095900 Sobic003G260400--Sobic003G095900 Sobic002G399800 Sobic002G399800 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic003G260400--Sobic002G316600 Sobic003G260400--Sobic010G003400 Sobic003G260400--Sobic001G089600 Sobic003G260400--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic003G260400--Sobic001G393900 Sobic010G115400--Sobic001G089600 Sobic010G115400--Sobic002G399800 Sobic010G115400--Sobic010G102600 Sobic010G115400--Sobic010G174700 Sobic010G115400--Sobic001G393900 Sobic010G115400--Sobic003G095900 Sobic004G019200 Sobic004G019200 Sobic010G115400--Sobic004G019200 Sobic010G115400--Sobic003G260400 Sobic003G032700 Sobic003G032700 Sobic010G115400--Sobic003G032700 Sobic001G089600--Sobic003G095900 Sobic001G089600--Sobic006G086600 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic008G014801 Sobic008G014801 Sobic010G102600--Sobic008G014801 Sobic010G102600--Sobic001G089600 Sobic010G102600--Sobic004G320500 Sobic010G102600--Sobic001G453400 Sobic010G102600--Sobic001G493700 Sobic005G122700 Sobic005G122700 Sobic010G102600--Sobic005G122700 Sobic010G102600--Sobic010G115400 Sobic010G102600--Sobic010G003400 Sobic003G166750 Sobic003G166750 Sobic010G102600--Sobic003G166750
Octagon: transcription factors


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