Gene annotation
Transcriptome id Sobic.003G445500.1
Synonym P-glycoprotein, PGP20, Sb03g047490, SbPGP9
Functional annotation "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1B6Q8I7
Pfam PF00005 PF00664
Panther DB PTHR24222 PTHR24222:SF27
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G55320 : P-glycoprotein 20
RAP-DB (Rice) LOC_Os01g74470.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a025812
Brachypodium KQK22291 , KQK11813 , PNT77643
Barley HORVU4Hr1G058580.8 , HORVU4Hr1G058580.9 , HORVU4Hr1G058580.6 , HORVU4Hr1G058580.7 , HORVU3Hr1G117180.29 , HORVU3Hr1G117180.24 , HORVU3Hr1G117180.25 , HORVU3Hr1G117180.31 , HORVU3Hr1G117180.30 , HORVU3Hr1G117180.33 , HORVU3Hr1G117180.32 , HORVU3Hr1G117180.34 , HORVU3Hr1G117180.28 , HORVU3Hr1G117180.26 , HORVU3Hr1G117180.27 , HORVU3Hr1G117180.22 , HORVU3Hr1G117180.23 , HORVU3Hr1G117180.20 , HORVU3Hr1G117180.21 , HORVU4Hr1G058580.2 , HORVU4Hr1G058580.1 , HORVU4Hr1G058580.18 , HORVU4Hr1G058580.19 , HORVU4Hr1G058580.10 , HORVU4Hr1G058580.11 , HORVU4Hr1G058580.12 , HORVU4Hr1G058580.5 , HORVU4Hr1G058580.14 , HORVU4Hr1G058580.15 , HORVU4Hr1G058580.16 , HORVU3Hr1G117180.8 , HORVU3Hr1G117180.3 , HORVU3Hr1G117180.2 , HORVU3Hr1G117180.6 , HORVU3Hr1G117180.9 , HORVU3Hr1G117180.7 , HORVU3Hr1G117180.5 , HORVU3Hr1G117180.4 , HORVU3Hr1G117180.1 , HORVU3Hr1G117180.17 , HORVU3Hr1G117180.16 , HORVU3Hr1G117180.15 , HORVU3Hr1G117180.14 , HORVU3Hr1G117180.13 , HORVU3Hr1G117180.12 , HORVU3Hr1G117180.11 , HORVU3Hr1G117180.10 , HORVU3Hr1G117180.19 , HORVU3Hr1G117180.18
Wheat TraesCS4B02G203000 , TraesCS3B02G607600 , TraesCS4D02G203900 , TraesCS4D02G203900 , TraesCS4D02G203900 , TraesCS3D02G541700 , TraesCS4A02G101600 , TraesCS4A02G101600 , TraesCS4A02G101600 , TraesCS3A02G536300
Populus PNT17816


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G111600 expressed protein -
2 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
3 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
4 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
5 Sobic.003G293200 plus-3 domain containing protein, expressed -
6 Sobic.005G191900 transporter family protein, putative, expressed -
7 Sobic.002G397500 SAC3/GANP family protein, expressed -
8 Sobic.003G294600 Homeobox domain containing protein, expressed -
9 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
10 Sobic.010G001100 chromo domain containing protein, expressed -
11 Sobic.001G400500 calpain, putative, expressed -
12 Sobic.001G063700 expressed protein -
13 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
14 Sobic.002G399800 PWWP domain containing protein, expressed -
15 Sobic.001G539016 - -
16 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
17 Sobic.007G063000 expressed protein -
18 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
19 Sobic.001G280900 expressed protein -
20 Sobic.001G540400 expressed protein -


Gene co-expression network
sample Sobic003G445500 Sobic003G445500 Sobic001G111600 Sobic001G111600 Sobic003G445500--Sobic001G111600 Sobic001G352900 Sobic001G352900 Sobic003G445500--Sobic001G352900 Sobic009G109200 Sobic009G109200 Sobic003G445500--Sobic009G109200 Sobic005G128400 Sobic005G128400 Sobic003G445500--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic003G445500--Sobic003G293200 Sobic005G191900 Sobic005G191900 Sobic003G445500--Sobic005G191900 Sobic002G397500 Sobic002G397500 Sobic003G445500--Sobic002G397500 Sobic003G294600 Sobic003G294600 Sobic003G445500--Sobic003G294600 Sobic010G053600 Sobic010G053600 Sobic003G445500--Sobic010G053600 Sobic002G068100 Sobic002G068100 Sobic001G111600--Sobic002G068100 Sobic001G111600--Sobic003G293200 Sobic001G111600--Sobic005G128400 Sobic001G354600 Sobic001G354600 Sobic001G111600--Sobic001G354600 Sobic001G457900 Sobic001G457900 Sobic001G111600--Sobic001G457900 Sobic010G112100 Sobic010G112100 Sobic001G111600--Sobic010G112100 Sobic010G275500 Sobic010G275500 Sobic001G111600--Sobic010G275500 Sobic005G220000 Sobic005G220000 Sobic001G111600--Sobic005G220000 Sobic002G362800 Sobic002G362800 Sobic001G111600--Sobic002G362800 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic004G242400 Sobic004G242400 Sobic001G352900--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic001G352900--Sobic010G001100 Sobic001G352900--Sobic009G109200 Sobic002G317200 Sobic002G317200 Sobic001G352900--Sobic002G317200 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic001G352900--Sobic003G293200 Sobic010G105200 Sobic010G105200 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic004G276400 Sobic004G276400 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic005G128400--Sobic003G293200 Sobic003G266001 Sobic003G266001 Sobic005G128400--Sobic003G266001 Sobic001G154900 Sobic001G154900 Sobic005G128400--Sobic001G154900 Sobic001G016600 Sobic001G016600 Sobic005G128400--Sobic001G016600 Sobic001G241200 Sobic001G241200 Sobic005G128400--Sobic001G241200 Sobic007G105100 Sobic007G105100 Sobic005G128400--Sobic007G105100 Sobic010G069100 Sobic010G069100 Sobic005G128400--Sobic010G069100 Sobic005G128400--Sobic001G540400 Sobic005G128400--Sobic005G008800 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic003G293200--Sobic005G128400 Sobic004G009600 Sobic004G009600 Sobic003G293200--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic007G117400 Sobic007G117400 Sobic003G293200--Sobic007G117400 Sobic003G293200--Sobic001G111600 Sobic001G311500 Sobic001G311500 Sobic005G191900--Sobic001G311500 Sobic001G363500 Sobic001G363500 Sobic005G191900--Sobic001G363500 Sobic010G094700 Sobic010G094700 Sobic005G191900--Sobic010G094700 Sobic009G247400 Sobic009G247400 Sobic005G191900--Sobic009G247400 Sobic005G191900--Sobic010G112100 Sobic007G157000 Sobic007G157000 Sobic005G191900--Sobic007G157000 Sobic006G118700 Sobic006G118700 Sobic005G191900--Sobic006G118700 Sobic008G028700 Sobic008G028700 Sobic005G191900--Sobic008G028700 Sobic008G002500 Sobic008G002500 Sobic005G191900--Sobic008G002500 Sobic002G397500--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G397500--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic002G397500--Sobic005G112300 Sobic002G397500--Sobic001G540400 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic002G397500--Sobic004G242400 Sobic002G397500--Sobic004G276400 Sobic002G397500--Sobic010G112100 Sobic003G294600--Sobic008G002500 Sobic009G142000 Sobic009G142000 Sobic003G294600--Sobic009G142000 Sobic009G088000 Sobic009G088000 Sobic003G294600--Sobic009G088000 Sobic001G453000 Sobic001G453000 Sobic003G294600--Sobic001G453000 Sobic010G148932 Sobic010G148932 Sobic003G294600--Sobic010G148932 Sobic007G077900 Sobic007G077900 Sobic003G294600--Sobic007G077900 Sobic006G040800 Sobic006G040800 Sobic003G294600--Sobic006G040800 Sobic003G294600--Sobic003G445500 Sobic003G294600--Sobic010G053600 Sobic010G053600--Sobic001G352900 Sobic010G053600--Sobic002G391600 Sobic010G053600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic010G053600--Sobic004G242400
Octagon: transcription factors


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