Gene annotation
Transcriptome id Sobic.002G391600.1
Synonym emb1507, Sb02g040700
Functional annotation U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
UniProt C5X3C4
Pfam PF00271 PF00270 PF02889
Panther DB PTHR24075
NCBI CDD -
KEGG Orthology K12854; SNRNP200, pre-mRNA-splicing helicase BRR2
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT1G20960 : U5 small nuclear ribonucleoprotein helicase, putative
RAP-DB (Rice) LOC_Os02g01740.1 : U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
MaizeGDB (Corn) Zm00025a048927
Brachypodium KQK18752 , KQJ92834
Barley HORVU6Hr1G004350.5 , HORVU6Hr1G004350.6 , HORVU6Hr1G004350.7 , HORVU6Hr1G004350.1 , HORVU6Hr1G004350.2 , HORVU6Hr1G004350.3 , HORVU6Hr1G004350.8 , HORVU7Hr1G040480.5 , HORVU7Hr1G040480.4 , HORVU7Hr1G040480.7 , HORVU7Hr1G040480.6 , HORVU7Hr1G040480.1 , HORVU7Hr1G040480.3 , HORVU7Hr1G040480.2 , HORVU7Hr1G040480.9 , HORVU7Hr1G040480.8
Wheat TraesCS6A02G024900 , TraesCS7D02G199800 , TraesCS6B02G034100 , TraesCS7A02G238700 , TraesCS6D02G028200 , TraesCS7B02G103700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
2 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
3 Sobic.008G016300 expressed protein -
4 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
5 Sobic.009G256300 DNA binding protein, putative, expressed -
6 Sobic.010G105200 SYD, putative, expressed -
7 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
8 Sobic.010G010700 PHD-finger family protein, expressed -
9 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
10 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
11 Sobic.001G289800 BAH domain containing protein, putative, expressed -
12 Sobic.001G002000 protein kinase domain containing protein, expressed -
13 Sobic.001G289600 BAH domain containing protein, putative, expressed -
14 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
15 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
16 Sobic.002G316600 expressed protein -
17 Sobic.003G196300 DNA binding protein, putative, expressed -
18 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
19 Sobic.003G293200 plus-3 domain containing protein, expressed -
20 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase


Gene co-expression network
sample Sobic002G391600 Sobic002G391600 Sobic010G053600 Sobic010G053600 Sobic002G391600--Sobic010G053600 Sobic001G352900 Sobic001G352900 Sobic002G391600--Sobic001G352900 Sobic008G016300 Sobic008G016300 Sobic002G391600--Sobic008G016300 Sobic004G242400 Sobic004G242400 Sobic002G391600--Sobic004G242400 Sobic009G256300 Sobic009G256300 Sobic002G391600--Sobic009G256300 Sobic010G105200 Sobic010G105200 Sobic002G391600--Sobic010G105200 Sobic009G109200 Sobic009G109200 Sobic002G391600--Sobic009G109200 Sobic010G010700 Sobic010G010700 Sobic002G391600--Sobic010G010700 Sobic002G133300 Sobic002G133300 Sobic002G391600--Sobic002G133300 Sobic010G053600--Sobic001G352900 Sobic010G053600--Sobic002G391600 Sobic010G053600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic010G053600--Sobic004G242400 Sobic001G352900--Sobic010G053600 Sobic001G352900--Sobic002G391600 Sobic001G352900--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic001G352900--Sobic010G001100 Sobic001G352900--Sobic009G109200 Sobic002G317200 Sobic002G317200 Sobic001G352900--Sobic002G317200 Sobic002G397500 Sobic002G397500 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic003G293200 Sobic003G293200 Sobic001G352900--Sobic003G293200 Sobic002G316600 Sobic002G316600 Sobic008G016300--Sobic002G316600 Sobic008G016300--Sobic002G391600 Sobic008G016300--Sobic010G010700 Sobic008G016300--Sobic009G256300 Sobic006G055200 Sobic006G055200 Sobic008G016300--Sobic006G055200 Sobic008G016300--Sobic009G109200 Sobic010G206900 Sobic010G206900 Sobic008G016300--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic008G016300--Sobic004G034900 Sobic007G103100 Sobic007G103100 Sobic008G016300--Sobic007G103100 Sobic007G062800 Sobic007G062800 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic004G242400--Sobic010G105200 Sobic004G276400 Sobic004G276400 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic010G112100 Sobic010G112100 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic004G242400--Sobic009G256300 Sobic001G433800 Sobic001G433800 Sobic004G242400--Sobic001G433800 Sobic009G256300--Sobic010G112100 Sobic003G389200 Sobic003G389200 Sobic009G256300--Sobic003G389200 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic003G360400 Sobic003G360400 Sobic009G256300--Sobic003G360400 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic001G542400 Sobic001G542400 Sobic009G256300--Sobic001G542400 Sobic010G105200--Sobic004G276400 Sobic010G105200--Sobic009G109200 Sobic003G186000 Sobic003G186000 Sobic010G105200--Sobic003G186000 Sobic007G098500 Sobic007G098500 Sobic010G105200--Sobic007G098500 Sobic010G105200--Sobic004G242400 Sobic010G105200--Sobic004G034900 Sobic010G105200--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic010G105200--Sobic005G008800 Sobic010G105200--Sobic010G010700 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic009G109200--Sobic002G397500 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic008G001200 Sobic008G001200 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700
Octagon: transcription factors


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