Gene annotation
Transcriptome id Sobic.010G053600.3
Synonym EMB177, EMB33, Sb10g004680, SUS2, EMB14
Functional annotation pre-mRNA-processing-splicing factor 8, putative, expressed
UniProt A0A1W0VRL2
Pfam PF01398 PF10598 PF08084 PF10597 PF08082 PF10596 PF12134 PF08083
Panther DB PTHR11140 PTHR11140:SF0
NCBI CDD -
KEGG Orthology K12856; PRPF8, pre-mRNA-processing factor 8
Gene Ontology GO:0005515; protein binding GO:0003723RNA binding GO:0000398mRNA splicing, via spliceosome GO:0017070U6 snRNA binding GO:0005681spliceosomal complex


Orthologs (automatic annotation)
TAIR AT1G80070 : Pre-mRNA-processing-splicing factor
RAP-DB (Rice) LOC_Os05g07050.1 : pre-mRNA-processing-splicing factor 8, putative, expressed
MaizeGDB (Corn) Zm00025a038248 , Zm00025a041631 , Zm00025a049900
Brachypodium KQK19437
Barley HORVU5Hr1G058160.9 , HORVU7Hr1G027000.2 , HORVU7Hr1G027000.3 , HORVU7Hr1G027000.1 , HORVU7Hr1G027000.6 , HORVU7Hr1G027000.4 , HORVU7Hr1G027000.5 , HORVU5Hr1G058160.1 , HORVU5Hr1G058160.3 , HORVU5Hr1G058160.2 , HORVU5Hr1G058160.5 , HORVU5Hr1G058160.4 , HORVU5Hr1G058160.7 , HORVU5Hr1G058160.6 , HORVU5Hr1G058160.8 , HORVU7Hr1G073700.1 , HORVU5Hr1G058160.15 , HORVU5Hr1G058160.14 , HORVU5Hr1G058160.11 , HORVU5Hr1G058160.10 , HORVU5Hr1G058160.13 , HORVU5Hr1G058160.12
Wheat TraesCS3D02G428800 , TraesCS6D02G372100 , TraesCS7A02G129700 , TraesCS5D02G201300 , TraesCS7D02G128800 , TraesCS5A02G189600 , TraesCS1B02G416400 , TraesCS1B02G368800 , TraesCS1B02G415700 , TraesCS7B02G029700 , TraesCS5B02G193600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
2 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
3 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
4 Sobic.001G004400 - K14290: XPO1, exportin-1
5 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
6 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
7 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
8 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
9 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
10 Sobic.002G397500 SAC3/GANP family protein, expressed -
11 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
12 Sobic.010G174700 expressed protein -
13 Sobic.006G137600 AT hook motif family protein, expressed -
14 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
15 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
16 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
17 Sobic.008G016300 expressed protein -
18 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
19 Sobic.003G294600 Homeobox domain containing protein, expressed -
20 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155


Gene co-expression network
sample Sobic010G053600 Sobic010G053600 Sobic001G352900 Sobic001G352900 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic009G109200 Sobic009G109200 Sobic010G053600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic004G242400 Sobic004G242400 Sobic010G053600--Sobic004G242400 Sobic001G352900--Sobic010G053600 Sobic001G352900--Sobic002G391600 Sobic001G352900--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic001G352900--Sobic010G001100 Sobic001G352900--Sobic009G109200 Sobic002G317200 Sobic002G317200 Sobic001G352900--Sobic002G317200 Sobic002G397500 Sobic002G397500 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic003G293200 Sobic003G293200 Sobic001G352900--Sobic003G293200 Sobic002G391600--Sobic010G053600 Sobic002G391600--Sobic001G352900 Sobic008G016300 Sobic008G016300 Sobic002G391600--Sobic008G016300 Sobic002G391600--Sobic004G242400 Sobic009G256300 Sobic009G256300 Sobic002G391600--Sobic009G256300 Sobic010G105200 Sobic010G105200 Sobic002G391600--Sobic010G105200 Sobic002G391600--Sobic009G109200 Sobic010G010700 Sobic010G010700 Sobic002G391600--Sobic010G010700 Sobic002G133300 Sobic002G133300 Sobic002G391600--Sobic002G133300 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic004G276400 Sobic004G276400 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic010G112100 Sobic010G112100 Sobic009G109200--Sobic010G112100 Sobic001G004400--Sobic002G133300 Sobic001G110600 Sobic001G110600 Sobic001G004400--Sobic001G110600 Sobic007G054800 Sobic007G054800 Sobic001G004400--Sobic007G054800 Sobic001G004400--Sobic004G248600 Sobic003G312100 Sobic003G312100 Sobic001G004400--Sobic003G312100 Sobic001G493700 Sobic001G493700 Sobic001G004400--Sobic001G493700 Sobic003G221400 Sobic003G221400 Sobic001G004400--Sobic003G221400 Sobic001G004400--Sobic004G276400 Sobic002G179400 Sobic002G179400 Sobic001G004400--Sobic002G179400 Sobic007G071400 Sobic007G071400 Sobic007G171100--Sobic007G071400 Sobic007G171100--Sobic010G053600 Sobic007G171100--Sobic001G352900 Sobic002G043100 Sobic002G043100 Sobic007G171100--Sobic002G043100 Sobic008G017100 Sobic008G017100 Sobic007G171100--Sobic008G017100 Sobic004G019200 Sobic004G019200 Sobic007G171100--Sobic004G019200 Sobic010G174700 Sobic010G174700 Sobic007G171100--Sobic010G174700 Sobic001G020000 Sobic001G020000 Sobic007G171100--Sobic001G020000 Sobic007G171100--Sobic006G036100 Sobic001G214600 Sobic001G214600 Sobic004G260100--Sobic001G214600 Sobic009G084900 Sobic009G084900 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic001G089600 Sobic001G089600 Sobic004G260100--Sobic001G089600 Sobic001G493200 Sobic001G493200 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic010G147833 Sobic010G147833 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic004G260100--Sobic010G053600 Sobic006G036100--Sobic010G174700 Sobic001G540800 Sobic001G540800 Sobic006G036100--Sobic001G540800 Sobic006G036100--Sobic010G053600 Sobic006G036100--Sobic001G004400 Sobic006G036100--Sobic002G391600 Sobic006G036100--Sobic002G133300 Sobic003G266001 Sobic003G266001 Sobic006G036100--Sobic003G266001 Sobic003G294600 Sobic003G294600 Sobic006G036100--Sobic003G294600 Sobic006G036100--Sobic001G352900 Sobic004G248600--Sobic009G109200 Sobic004G248600--Sobic001G004400 Sobic004G248600--Sobic002G133300 Sobic003G072200 Sobic003G072200 Sobic004G248600--Sobic003G072200 Sobic004G248600--Sobic003G312100 Sobic003G186000 Sobic003G186000 Sobic004G248600--Sobic003G186000 Sobic004G248600--Sobic004G276400 Sobic004G248600--Sobic002G397500 Sobic005G162500 Sobic005G162500 Sobic004G248600--Sobic005G162500 Sobic007G062800 Sobic007G062800 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic004G242400--Sobic009G256300 Sobic001G433800 Sobic001G433800 Sobic004G242400--Sobic001G433800
Octagon: transcription factors


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