Gene annotation
Transcriptome id Sobic.001G451300.1
Synonym Sb01g042430, NUP155
Functional annotation NUP155, putative, expressed
UniProt C5WSM7
Pfam PF03177 PF08801
Panther DB PTHR10350 PTHR10350:SF6
NCBI CDD -
KEGG Orthology K14312; NUP155, NUP170, nuclear pore complex protein Nup155
Gene Ontology GO:0017056; structural constituent of nuclear pore GO:0006913nucleocytoplasmic transport GO:0005643nuclear pore


Orthologs (automatic annotation)
TAIR AT1G14850 : nucleoporin 155
RAP-DB (Rice) LOC_Os06g20090.1 : NUP155, putative, expressed
MaizeGDB (Corn) Zm00025a001373 , Zm00025a019465 , Zm00025a053028 , Zm00025a049960
Brachypodium KQK22825
Barley HORVU1Hr1G049740.3 , HORVU1Hr1G049740.2 , HORVU1Hr1G049740.1 , HORVU1Hr1G049740.7 , HORVU1Hr1G049740.4 , HORVU1Hr1G049740.9 , HORVU1Hr1G049740.8 , HORVU4Hr1G066730.1 , HORVU4Hr1G066730.2 , HORVU1Hr1G049740.13 , HORVU1Hr1G049740.12 , HORVU1Hr1G049740.11 , HORVU1Hr1G049740.10 , HORVU1Hr1G049740.17 , HORVU1Hr1G049740.16 , HORVU1Hr1G049740.18 , HORVU1Hr1G049740.22 , HORVU1Hr1G049740.23 , HORVU1Hr1G049740.21
Wheat TraesCS4B02G240400 , TraesCS4B02G240400 , TraesCS4A02G063400 , TraesCS4A02G063400 , TraesCS4A02G063400 , TraesCS4A02G063400 , TraesCS4D02G240200 , TraesCS4D02G240200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G262100 expressed protein -
2 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
3 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
4 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
5 Sobic.003G309050 - -
6 Sobic.010G174700 expressed protein -
7 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
8 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
9 Sobic.002G399800 PWWP domain containing protein, expressed -
10 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
11 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
12 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
13 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
14 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
15 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
16 Sobic.001G536000 actin, putative, expressed K11340: ACTL6A, actin-like protein 6A
17 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
18 Sobic.001G453000 no apical meristem protein, putative, expressed -
19 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
20 Sobic.001G004400 - K14290: XPO1, exportin-1


Gene co-expression network
sample Sobic001G451300 Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic002G043100 Sobic002G043100 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic002G371600 Sobic002G371600 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic002G399800 Sobic002G399800 Sobic001G451300--Sobic002G399800 Sobic010G262100--Sobic001G451300 Sobic010G262100--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic010G262100--Sobic001G248100 Sobic008G080500 Sobic008G080500 Sobic010G262100--Sobic008G080500 Sobic010G262100--Sobic002G043100 Sobic010G262100--Sobic002G399800 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800 Sobic004G034700--Sobic001G451300 Sobic002G412700 Sobic002G412700 Sobic004G034700--Sobic002G412700 Sobic001G536000 Sobic001G536000 Sobic004G034700--Sobic001G536000 Sobic010G053600 Sobic010G053600 Sobic004G034700--Sobic010G053600 Sobic004G256500 Sobic004G256500 Sobic004G034700--Sobic004G256500 Sobic006G036100 Sobic006G036100 Sobic004G034700--Sobic006G036100 Sobic001G020000 Sobic001G020000 Sobic004G034700--Sobic001G020000 Sobic004G034700--Sobic010G138900 Sobic004G034700--Sobic001G248100 Sobic008G088842 Sobic008G088842 Sobic010G138900--Sobic008G088842 Sobic010G138900--Sobic010G262100 Sobic010G138900--Sobic001G451300 Sobic010G138900--Sobic009G142000 Sobic001G453000 Sobic001G453000 Sobic010G138900--Sobic001G453000 Sobic003G435500 Sobic003G435500 Sobic010G138900--Sobic003G435500 Sobic003G250900 Sobic003G250900 Sobic010G138900--Sobic003G250900 Sobic010G138900--Sobic004G034700 Sobic010G138900--Sobic002G043100 Sobic004G107200 Sobic004G107200 Sobic002G043100--Sobic004G107200 Sobic002G043100--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic002G043100--Sobic001G501800 Sobic002G043100--Sobic002G399800 Sobic002G043100--Sobic010G262100 Sobic006G269800 Sobic006G269800 Sobic002G043100--Sobic006G269800 Sobic002G043100--Sobic003G309050 Sobic002G425500 Sobic002G425500 Sobic002G043100--Sobic002G425500 Sobic001G393900 Sobic001G393900 Sobic002G043100--Sobic001G393900 Sobic003G309050--Sobic001G451300 Sobic003G309050--Sobic001G393900 Sobic003G309050--Sobic002G043100 Sobic003G309050--Sobic002G399800 Sobic003G309050--Sobic002G371600 Sobic006G245900 Sobic006G245900 Sobic003G309050--Sobic006G245900 Sobic001G417500 Sobic001G417500 Sobic003G309050--Sobic001G417500 Sobic003G260400 Sobic003G260400 Sobic003G309050--Sobic003G260400 Sobic003G309050--Sobic010G262100 Sobic010G174700--Sobic006G036100 Sobic001G352900 Sobic001G352900 Sobic010G174700--Sobic001G352900 Sobic001G089600 Sobic001G089600 Sobic010G174700--Sobic001G089600 Sobic001G052400 Sobic001G052400 Sobic010G174700--Sobic001G052400 Sobic002G145800 Sobic002G145800 Sobic010G174700--Sobic002G145800 Sobic010G174700--Sobic001G451300 Sobic010G174700--Sobic010G053600 Sobic001G453400 Sobic001G453400 Sobic010G174700--Sobic001G453400 Sobic005G220000 Sobic005G220000 Sobic010G174700--Sobic005G220000 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic002G371600--Sobic010G262100 Sobic003G294600 Sobic003G294600 Sobic009G142000--Sobic003G294600 Sobic009G142000--Sobic001G451300 Sobic004G085000 Sobic004G085000 Sobic009G142000--Sobic004G085000 Sobic007G029200 Sobic007G029200 Sobic009G142000--Sobic007G029200 Sobic009G142000--Sobic001G453000 Sobic003G123100 Sobic003G123100 Sobic009G142000--Sobic003G123100 Sobic008G132000 Sobic008G132000 Sobic009G142000--Sobic008G132000 Sobic005G200900 Sobic005G200900 Sobic009G142000--Sobic005G200900 Sobic009G142000--Sobic001G536000 Sobic003G095900 Sobic003G095900 Sobic002G399800--Sobic003G095900 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic004G248600 Sobic004G248600 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic002G399800--Sobic001G089600 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200
Octagon: transcription factors


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