Gene annotation
Transcriptome id Sobic.010G138900.1
Synonym ATTADA, TADA, Sb10g014230
Functional annotation cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
UniProt C5Z2D8
Pfam PF00383
Panther DB PTHR11079 PTHR11079:SF72
NCBI CDD KOG1018; Cytosine deaminase FCY1 and related enzymes
KEGG Orthology K11991; tRNA(adenine34) deaminase
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G68720 : tRNA arginine adenosine deaminase
RAP-DB (Rice) LOC_Os06g29430.1 : cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
MaizeGDB (Corn) Zm00025a050698
Brachypodium KQK18413
Barley HORVU7Hr1G047400.1
Wheat TraesCS7A02G231400 , TraesCS7A02G231400 , TraesCS7D02G231600 , TraesCS7B02G129800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G088842 - -
2 Sobic.010G262100 expressed protein -
3 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
4 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
5 Sobic.001G453000 no apical meristem protein, putative, expressed -
6 Sobic.003G435500 expressed protein -
7 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
8 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
9 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
10 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
11 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
12 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
13 Sobic.006G140600 HEAT repeat family protein, putative, expressed K16578: CLIP-associating protein 1/2
14 Sobic.003G294600 Homeobox domain containing protein, expressed -
15 Sobic.003G314700 expressed protein -
16 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
17 Sobic.006G137600 AT hook motif family protein, expressed -
18 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
19 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
20 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1


Gene co-expression network
sample Sobic010G138900 Sobic010G138900 Sobic008G088842 Sobic008G088842 Sobic010G138900--Sobic008G088842 Sobic010G262100 Sobic010G262100 Sobic010G138900--Sobic010G262100 Sobic001G451300 Sobic001G451300 Sobic010G138900--Sobic001G451300 Sobic009G142000 Sobic009G142000 Sobic010G138900--Sobic009G142000 Sobic001G453000 Sobic001G453000 Sobic010G138900--Sobic001G453000 Sobic003G435500 Sobic003G435500 Sobic010G138900--Sobic003G435500 Sobic003G250900 Sobic003G250900 Sobic010G138900--Sobic003G250900 Sobic004G034700 Sobic004G034700 Sobic010G138900--Sobic004G034700 Sobic002G043100 Sobic002G043100 Sobic010G138900--Sobic002G043100 Sobic008G088842--Sobic010G138900 Sobic006G140600 Sobic006G140600 Sobic008G088842--Sobic006G140600 Sobic002G143200 Sobic002G143200 Sobic008G088842--Sobic002G143200 Sobic008G088842--Sobic010G262100 Sobic003G311600 Sobic003G311600 Sobic008G088842--Sobic003G311600 Sobic008G088842--Sobic001G451300 Sobic006G280100 Sobic006G280100 Sobic008G088842--Sobic006G280100 Sobic006G208400 Sobic006G208400 Sobic008G088842--Sobic006G208400 Sobic002G340200 Sobic002G340200 Sobic008G088842--Sobic002G340200 Sobic010G262100--Sobic001G451300 Sobic010G262100--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic010G262100--Sobic001G248100 Sobic008G080500 Sobic008G080500 Sobic010G262100--Sobic008G080500 Sobic010G262100--Sobic002G043100 Sobic002G399800 Sobic002G399800 Sobic010G262100--Sobic002G399800 Sobic002G371600 Sobic002G371600 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800 Sobic001G451300--Sobic010G262100 Sobic001G451300--Sobic004G034700 Sobic001G451300--Sobic010G138900 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic001G451300--Sobic002G371600 Sobic001G451300--Sobic009G142000 Sobic001G451300--Sobic002G399800 Sobic003G294600 Sobic003G294600 Sobic009G142000--Sobic003G294600 Sobic009G142000--Sobic001G451300 Sobic004G085000 Sobic004G085000 Sobic009G142000--Sobic004G085000 Sobic007G029200 Sobic007G029200 Sobic009G142000--Sobic007G029200 Sobic009G142000--Sobic001G453000 Sobic003G123100 Sobic003G123100 Sobic009G142000--Sobic003G123100 Sobic008G132000 Sobic008G132000 Sobic009G142000--Sobic008G132000 Sobic005G200900 Sobic005G200900 Sobic009G142000--Sobic005G200900 Sobic001G536000 Sobic001G536000 Sobic009G142000--Sobic001G536000 Sobic007G168300 Sobic007G168300 Sobic001G453000--Sobic007G168300 Sobic001G453000--Sobic003G294600 Sobic001G453000--Sobic009G142000 Sobic003G042400 Sobic003G042400 Sobic001G453000--Sobic003G042400 Sobic007G155500 Sobic007G155500 Sobic001G453000--Sobic007G155500 Sobic002G396500 Sobic002G396500 Sobic001G453000--Sobic002G396500 Sobic001G453000--Sobic004G085000 Sobic002G179400 Sobic002G179400 Sobic001G453000--Sobic002G179400 Sobic010G114900 Sobic010G114900 Sobic001G453000--Sobic010G114900 Sobic001G385400 Sobic001G385400 Sobic003G435500--Sobic001G385400 Sobic003G435500--Sobic010G138900 Sobic001G143600 Sobic001G143600 Sobic003G435500--Sobic001G143600 Sobic002G127400 Sobic002G127400 Sobic003G435500--Sobic002G127400 Sobic006G173200 Sobic006G173200 Sobic003G435500--Sobic006G173200 Sobic003G144300 Sobic003G144300 Sobic003G435500--Sobic003G144300 Sobic003G435500--Sobic010G262100 Sobic004G038100 Sobic004G038100 Sobic003G435500--Sobic004G038100 Sobic003G435500--Sobic002G143200 Sobic001G437400 Sobic001G437400 Sobic003G250900--Sobic001G437400 Sobic002G150800 Sobic002G150800 Sobic003G250900--Sobic002G150800 Sobic003G250900--Sobic001G143600 Sobic003G250900--Sobic003G314700 Sobic003G250900--Sobic010G138900 Sobic009G049200 Sobic009G049200 Sobic003G250900--Sobic009G049200 Sobic006G265600 Sobic006G265600 Sobic003G250900--Sobic006G265600 Sobic002G051800 Sobic002G051800 Sobic003G250900--Sobic002G051800 Sobic003G250900--Sobic006G280100 Sobic004G034700--Sobic001G451300 Sobic002G412700 Sobic002G412700 Sobic004G034700--Sobic002G412700 Sobic004G034700--Sobic001G536000 Sobic010G053600 Sobic010G053600 Sobic004G034700--Sobic010G053600 Sobic004G256500 Sobic004G256500 Sobic004G034700--Sobic004G256500 Sobic006G036100 Sobic006G036100 Sobic004G034700--Sobic006G036100 Sobic001G020000 Sobic001G020000 Sobic004G034700--Sobic001G020000 Sobic004G034700--Sobic010G138900 Sobic004G034700--Sobic001G248100 Sobic004G107200 Sobic004G107200 Sobic002G043100--Sobic004G107200 Sobic002G043100--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic002G043100--Sobic001G501800 Sobic002G043100--Sobic002G399800 Sobic002G043100--Sobic010G262100 Sobic006G269800 Sobic006G269800 Sobic002G043100--Sobic006G269800 Sobic002G043100--Sobic003G309050 Sobic002G425500 Sobic002G425500 Sobic002G043100--Sobic002G425500 Sobic001G393900 Sobic001G393900 Sobic002G043100--Sobic001G393900
Octagon: transcription factors


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