Gene annotation
Transcriptome id Sobic.003G435500.2,Sobic.003G435500.1,Sobic.003G435500.3
Synonym
Functional annotation expressed protein
UniProt A0A1B6Q8D6
Pfam PF10358
Panther DB PTHR34452 PTHR34452:SF1
NCBI CDD KOG0979; Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily KOG0978E3 ubiquitin ligase involved in syntaxin degradation
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G22060 : -
RAP-DB (Rice) LOC_Os10g21940.1 : expressed protein
MaizeGDB (Corn) Zm00025a025901
Brachypodium KQJ93226 , KQJ93227 , KQJ93230
Barley HORVU6Hr1G084720.14 , HORVU6Hr1G084720.11 , HORVU6Hr1G084720.10 , HORVU6Hr1G084720.13 , HORVU6Hr1G084720.12 , HORVU6Hr1G084720.1 , HORVU6Hr1G084720.9 , HORVU6Hr1G084720.8 , HORVU6Hr1G084720.3 , HORVU6Hr1G084720.2 , HORVU6Hr1G084720.5 , HORVU6Hr1G084720.4 , HORVU6Hr1G084720.7 , HORVU6Hr1G084720.6
Wheat TraesCS6D02G337700 , TraesCS6A02G355400 , TraesCS6B02G388200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
2 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
3 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
4 Sobic.002G127400 glycosyl hydrolase family 10 protein, putative, expressed -
5 Sobic.006G173200 beige/BEACH domain containing protein, expressed -
6 Sobic.003G144300 expressed protein -
7 Sobic.010G262100 expressed protein -
8 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
9 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
10 Sobic.006G140600 HEAT repeat family protein, putative, expressed K16578: CLIP-associating protein 1/2
11 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
12 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
13 Sobic.009G167100 TBC domain containing protein, expressed -
14 Sobic.008G088842 - -
15 Sobic.003G314700 expressed protein -
16 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
17 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
18 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
19 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
20 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5


Gene co-expression network
sample Sobic003G435500 Sobic003G435500 Sobic001G385400 Sobic001G385400 Sobic003G435500--Sobic001G385400 Sobic010G138900 Sobic010G138900 Sobic003G435500--Sobic010G138900 Sobic001G143600 Sobic001G143600 Sobic003G435500--Sobic001G143600 Sobic002G127400 Sobic002G127400 Sobic003G435500--Sobic002G127400 Sobic006G173200 Sobic006G173200 Sobic003G435500--Sobic006G173200 Sobic003G144300 Sobic003G144300 Sobic003G435500--Sobic003G144300 Sobic010G262100 Sobic010G262100 Sobic003G435500--Sobic010G262100 Sobic004G038100 Sobic004G038100 Sobic003G435500--Sobic004G038100 Sobic002G143200 Sobic002G143200 Sobic003G435500--Sobic002G143200 Sobic001G385400--Sobic001G143600 Sobic001G385400--Sobic002G143200 Sobic001G385400--Sobic003G435500 Sobic008G015200 Sobic008G015200 Sobic001G385400--Sobic008G015200 Sobic010G250800 Sobic010G250800 Sobic001G385400--Sobic010G250800 Sobic001G507200 Sobic001G507200 Sobic001G385400--Sobic001G507200 Sobic002G002100 Sobic002G002100 Sobic001G385400--Sobic002G002100 Sobic009G167100 Sobic009G167100 Sobic001G385400--Sobic009G167100 Sobic006G140600 Sobic006G140600 Sobic001G385400--Sobic006G140600 Sobic008G088842 Sobic008G088842 Sobic010G138900--Sobic008G088842 Sobic010G138900--Sobic010G262100 Sobic001G451300 Sobic001G451300 Sobic010G138900--Sobic001G451300 Sobic009G142000 Sobic009G142000 Sobic010G138900--Sobic009G142000 Sobic001G453000 Sobic001G453000 Sobic010G138900--Sobic001G453000 Sobic010G138900--Sobic003G435500 Sobic003G250900 Sobic003G250900 Sobic010G138900--Sobic003G250900 Sobic004G034700 Sobic004G034700 Sobic010G138900--Sobic004G034700 Sobic002G043100 Sobic002G043100 Sobic010G138900--Sobic002G043100 Sobic001G143600--Sobic001G385400 Sobic009G049200 Sobic009G049200 Sobic001G143600--Sobic009G049200 Sobic002G219900 Sobic002G219900 Sobic001G143600--Sobic002G219900 Sobic001G143600--Sobic003G250900 Sobic001G143600--Sobic003G435500 Sobic006G242500 Sobic006G242500 Sobic001G143600--Sobic006G242500 Sobic010G065800 Sobic010G065800 Sobic001G143600--Sobic010G065800 Sobic006G236000 Sobic006G236000 Sobic001G143600--Sobic006G236000 Sobic001G143600--Sobic001G507200 Sobic001G338800 Sobic001G338800 Sobic002G127400--Sobic001G338800 Sobic003G294600 Sobic003G294600 Sobic002G127400--Sobic003G294600 Sobic002G127400--Sobic003G435500 Sobic005G216300 Sobic005G216300 Sobic002G127400--Sobic005G216300 Sobic001G335900 Sobic001G335900 Sobic002G127400--Sobic001G335900 Sobic001G518400 Sobic001G518400 Sobic002G127400--Sobic001G518400 Sobic002G127400--Sobic009G142000 Sobic002G127400--Sobic010G138900 Sobic003G314700 Sobic003G314700 Sobic002G127400--Sobic003G314700 Sobic006G173200--Sobic001G507200 Sobic009G073400 Sobic009G073400 Sobic006G173200--Sobic009G073400 Sobic006G173200--Sobic003G435500 Sobic001G159800 Sobic001G159800 Sobic006G173200--Sobic001G159800 Sobic010G090500 Sobic010G090500 Sobic006G173200--Sobic010G090500 Sobic009G105900 Sobic009G105900 Sobic006G173200--Sobic009G105900 Sobic006G173200--Sobic001G385400 Sobic006G173200--Sobic010G250800 Sobic009G052100 Sobic009G052100 Sobic006G173200--Sobic009G052100 Sobic004G256500 Sobic004G256500 Sobic003G144300--Sobic004G256500 Sobic003G144300--Sobic003G294600 Sobic002G327000 Sobic002G327000 Sobic003G144300--Sobic002G327000 Sobic002G179400 Sobic002G179400 Sobic003G144300--Sobic002G179400 Sobic007G168300 Sobic007G168300 Sobic003G144300--Sobic007G168300 Sobic008G124800 Sobic008G124800 Sobic003G144300--Sobic008G124800 Sobic007G019300 Sobic007G019300 Sobic003G144300--Sobic007G019300 Sobic004G085000 Sobic004G085000 Sobic003G144300--Sobic004G085000 Sobic003G144300--Sobic001G453000 Sobic010G262100--Sobic001G451300 Sobic010G262100--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic010G262100--Sobic001G248100 Sobic008G080500 Sobic008G080500 Sobic010G262100--Sobic008G080500 Sobic010G262100--Sobic002G043100 Sobic002G399800 Sobic002G399800 Sobic010G262100--Sobic002G399800 Sobic002G371600 Sobic002G371600 Sobic010G262100--Sobic002G371600 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic002G143200--Sobic001G385400 Sobic002G143200--Sobic006G140600 Sobic002G143200--Sobic008G088842 Sobic002G098500 Sobic002G098500 Sobic002G143200--Sobic002G098500 Sobic002G143200--Sobic008G015200 Sobic002G143200--Sobic003G435500 Sobic001G367100 Sobic001G367100 Sobic002G143200--Sobic001G367100 Sobic004G341700 Sobic004G341700 Sobic002G143200--Sobic004G341700 Sobic008G192700 Sobic008G192700 Sobic002G143200--Sobic008G192700
Octagon: transcription factors


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