Gene annotation
Transcriptome id Sobic.001G143600.1
Synonym GN, Sb01g012510, EMB30, VAN7
Functional annotation pattern formation protein EMB30, putative, expressed
UniProt A0A1B6QIX8
Pfam PF12783 PF01369
Panther DB PTHR10663 PTHR10663:SF131
NCBI CDD -
KEGG Orthology K18443; golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
Gene Ontology GO:0005086; ARF guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT1G13980 : sec7 domain-containing protein
RAP-DB (Rice) LOC_Os03g46330.1 : pattern formation protein EMB30, putative, expressed
MaizeGDB (Corn) Zm00025a017162
Brachypodium KQK13858 , PNT74339
Barley HORVU3Hr1G017750.1 , HORVU3Hr1G017750.3 , HORVU3Hr1G017750.5 , HORVU3Hr1G017750.4 , HORVU3Hr1G017750.7 , HORVU3Hr1G017750.6 , HORVU3Hr1G017750.9 , HORVU3Hr1G017750.8 , HORVU3Hr1G017750.11 , HORVU3Hr1G017750.10 , HORVU4Hr1G002920.2 , HORVU4Hr1G002880.1 , HORVU4Hr1G002880.4 , HORVU4Hr1G002880.2 , HORVU4Hr1G002880.3
Wheat TraesCS4A02G294900 , TraesCS4D02G016900 , TraesCS4B02G018700
Populus -


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cDNA sequences
Sobic.001G143600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
2 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
3 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
4 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
5 Sobic.003G435500 expressed protein -
6 Sobic.006G242500 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
7 Sobic.010G065800 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
8 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
9 Sobic.001G507200 PIR, putative, expressed K05749: cytoplasmic FMR1 interacting protein
10 Sobic.010G250800 DNA binding protein, putative, expressed -
11 Sobic.009G176700 expressed protein -
12 Sobic.006G188800 H-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
13 Sobic.008G088842 - -
14 Sobic.006G280100 SET domain containing protein, expressed -
15 Sobic.008G083500 expressed protein -
16 Sobic.010G262100 expressed protein -
17 Sobic.001G395200 cyclin-related protein, putative, expressed -
18 Sobic.008G015200 NAP1, putative, expressed K05750: NCKAP1, NCK-associated protein 1
19 Sobic.005G021900 expressed protein -
20 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component


Gene co-expression network
sample Sobic001G143600 Sobic001G143600 Sobic001G385400 Sobic001G385400 Sobic001G143600--Sobic001G385400 Sobic009G049200 Sobic009G049200 Sobic001G143600--Sobic009G049200 Sobic002G219900 Sobic002G219900 Sobic001G143600--Sobic002G219900 Sobic003G250900 Sobic003G250900 Sobic001G143600--Sobic003G250900 Sobic003G435500 Sobic003G435500 Sobic001G143600--Sobic003G435500 Sobic006G242500 Sobic006G242500 Sobic001G143600--Sobic006G242500 Sobic010G065800 Sobic010G065800 Sobic001G143600--Sobic010G065800 Sobic006G236000 Sobic006G236000 Sobic001G143600--Sobic006G236000 Sobic001G507200 Sobic001G507200 Sobic001G143600--Sobic001G507200 Sobic001G385400--Sobic001G143600 Sobic002G143200 Sobic002G143200 Sobic001G385400--Sobic002G143200 Sobic001G385400--Sobic003G435500 Sobic008G015200 Sobic008G015200 Sobic001G385400--Sobic008G015200 Sobic010G250800 Sobic010G250800 Sobic001G385400--Sobic010G250800 Sobic001G385400--Sobic001G507200 Sobic002G002100 Sobic002G002100 Sobic001G385400--Sobic002G002100 Sobic009G167100 Sobic009G167100 Sobic001G385400--Sobic009G167100 Sobic006G140600 Sobic006G140600 Sobic001G385400--Sobic006G140600 Sobic009G052100 Sobic009G052100 Sobic009G049200--Sobic009G052100 Sobic009G049200--Sobic001G507200 Sobic009G049200--Sobic001G143600 Sobic009G049200--Sobic003G250900 Sobic009G049200--Sobic010G250800 Sobic004G231200 Sobic004G231200 Sobic009G049200--Sobic004G231200 Sobic004G307900 Sobic004G307900 Sobic009G049200--Sobic004G307900 Sobic003G423600 Sobic003G423600 Sobic009G049200--Sobic003G423600 Sobic009G049200--Sobic008G015200 Sobic002G430900 Sobic002G430900 Sobic002G219900--Sobic002G430900 Sobic010G149600 Sobic010G149600 Sobic002G219900--Sobic010G149600 Sobic007G125700 Sobic007G125700 Sobic002G219900--Sobic007G125700 Sobic001G395200 Sobic001G395200 Sobic002G219900--Sobic001G395200 Sobic006G280100 Sobic006G280100 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic001G437400 Sobic001G437400 Sobic003G250900--Sobic001G437400 Sobic002G150800 Sobic002G150800 Sobic003G250900--Sobic002G150800 Sobic003G250900--Sobic001G143600 Sobic003G314700 Sobic003G314700 Sobic003G250900--Sobic003G314700 Sobic010G138900 Sobic010G138900 Sobic003G250900--Sobic010G138900 Sobic003G250900--Sobic009G049200 Sobic006G265600 Sobic006G265600 Sobic003G250900--Sobic006G265600 Sobic002G051800 Sobic002G051800 Sobic003G250900--Sobic002G051800 Sobic003G250900--Sobic006G280100 Sobic003G435500--Sobic001G385400 Sobic003G435500--Sobic010G138900 Sobic003G435500--Sobic001G143600 Sobic002G127400 Sobic002G127400 Sobic003G435500--Sobic002G127400 Sobic006G173200 Sobic006G173200 Sobic003G435500--Sobic006G173200 Sobic003G144300 Sobic003G144300 Sobic003G435500--Sobic003G144300 Sobic010G262100 Sobic010G262100 Sobic003G435500--Sobic010G262100 Sobic004G038100 Sobic004G038100 Sobic003G435500--Sobic004G038100 Sobic003G435500--Sobic002G143200 Sobic006G242500--Sobic001G143600 Sobic001G210000 Sobic001G210000 Sobic006G242500--Sobic001G210000 Sobic004G198900 Sobic004G198900 Sobic006G242500--Sobic004G198900 Sobic006G242500--Sobic003G274400 Sobic009G045300 Sobic009G045300 Sobic006G242500--Sobic009G045300 Sobic002G318600 Sobic002G318600 Sobic006G242500--Sobic002G318600 Sobic006G242500--Sobic004G307900 Sobic006G188800 Sobic006G188800 Sobic006G242500--Sobic006G188800 Sobic001G397800 Sobic001G397800 Sobic006G242500--Sobic001G397800 Sobic008G136100 Sobic008G136100 Sobic010G065800--Sobic008G136100 Sobic001G408300 Sobic001G408300 Sobic010G065800--Sobic001G408300 Sobic006G067700 Sobic006G067700 Sobic010G065800--Sobic006G067700 Sobic010G065800--Sobic001G143600 Sobic009G010300 Sobic009G010300 Sobic010G065800--Sobic009G010300 Sobic010G065800--Sobic002G219900 Sobic010G065800--Sobic001G385400 Sobic006G056000 Sobic006G056000 Sobic010G065800--Sobic006G056000 Sobic009G148200 Sobic009G148200 Sobic010G065800--Sobic009G148200 Sobic004G215900 Sobic004G215900 Sobic006G236000--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic006G236000--Sobic008G068100 Sobic003G123100 Sobic003G123100 Sobic006G236000--Sobic003G123100 Sobic002G043000 Sobic002G043000 Sobic006G236000--Sobic002G043000 Sobic006G112700 Sobic006G112700 Sobic006G236000--Sobic006G112700 Sobic006G181800 Sobic006G181800 Sobic006G236000--Sobic006G181800 Sobic009G191500 Sobic009G191500 Sobic006G236000--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic006G236000--Sobic002G003300 Sobic008G111600 Sobic008G111600 Sobic006G236000--Sobic008G111600 Sobic001G507200--Sobic009G052100 Sobic001G507200--Sobic009G049200 Sobic001G507200--Sobic006G173200 Sobic004G315700 Sobic004G315700 Sobic001G507200--Sobic004G315700 Sobic006G071628 Sobic006G071628 Sobic001G507200--Sobic006G071628 Sobic001G296800 Sobic001G296800 Sobic001G507200--Sobic001G296800 Sobic001G507200--Sobic001G385400 Sobic008G192700 Sobic008G192700 Sobic001G507200--Sobic008G192700 Sobic002G399900 Sobic002G399900 Sobic001G507200--Sobic002G399900
Octagon: transcription factors


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