Gene annotation
Transcriptome id Sobic.009G049200.1
Synonym Sb09g004180, ATGCP4, GCP4
Functional annotation Spc97 / Spc98 family protein, putative, expressed
UniProt C5Z0H7
Pfam PF04130
Panther DB PTHR19302 PTHR19302:SF27
NCBI CDD -
KEGG Orthology K16571; TUBGCP4, gamma-tubulin complex component 4
Gene Ontology GO:0005815; microtubule organizing center GO:0000922spindle pole GO:0000226microtubule cytoskeleton organization


Orthologs (automatic annotation)
TAIR AT3G53760 : GAMMA-TUBULIN COMPLEX PROTEIN 4
RAP-DB (Rice) LOC_Os05g06260.1 : Spc97 / Spc98 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a042979
Brachypodium KQK07416
Barley HORVU1Hr1G022100.10 , HORVU1Hr1G022100.11 , HORVU1Hr1G022100.13 , HORVU1Hr1G022100.15 , HORVU1Hr1G022100.2 , HORVU1Hr1G022100.3 , HORVU1Hr1G022100.1 , HORVU1Hr1G022100.6 , HORVU1Hr1G022100.7 , HORVU1Hr1G022100.4 , HORVU1Hr1G022100.5 , HORVU1Hr1G022100.12 , HORVU1Hr1G022100.14 , HORVU1Hr1G022100.8 , HORVU1Hr1G022100.9
Wheat TraesCS1A02G095200 , TraesCS1B02G123000 , TraesCS1D02G103700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
2 Sobic.001G507200 PIR, putative, expressed K05749: cytoplasmic FMR1 interacting protein
3 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
4 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
5 Sobic.010G250800 DNA binding protein, putative, expressed -
6 Sobic.004G231200 amine oxidase, putative, expressed K11450: KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
7 Sobic.004G307900 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
8 Sobic.003G423600 expressed protein K06228: fused
9 Sobic.008G015200 NAP1, putative, expressed K05750: NCKAP1, NCK-associated protein 1
10 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
11 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
12 Sobic.004G034300 transducin family protein, putative, expressed -
13 Sobic.001G210000 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
14 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
15 Sobic.002G150800 WD domain, G-beta repeat domain containing protein, expressed K16547: protein NEDD1
16 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
17 Sobic.006G281400 expressed protein -
18 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
19 Sobic.003G009200 expressed protein -
20 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic009G049200 Sobic009G049200 Sobic009G052100 Sobic009G052100 Sobic009G049200--Sobic009G052100 Sobic001G507200 Sobic001G507200 Sobic009G049200--Sobic001G507200 Sobic001G143600 Sobic001G143600 Sobic009G049200--Sobic001G143600 Sobic003G250900 Sobic003G250900 Sobic009G049200--Sobic003G250900 Sobic010G250800 Sobic010G250800 Sobic009G049200--Sobic010G250800 Sobic004G231200 Sobic004G231200 Sobic009G049200--Sobic004G231200 Sobic004G307900 Sobic004G307900 Sobic009G049200--Sobic004G307900 Sobic003G423600 Sobic003G423600 Sobic009G049200--Sobic003G423600 Sobic008G015200 Sobic008G015200 Sobic009G049200--Sobic008G015200 Sobic004G315700 Sobic004G315700 Sobic009G052100--Sobic004G315700 Sobic004G156200 Sobic004G156200 Sobic009G052100--Sobic004G156200 Sobic009G052100--Sobic001G507200 Sobic009G052100--Sobic009G049200 Sobic006G071628 Sobic006G071628 Sobic009G052100--Sobic006G071628 Sobic009G052100--Sobic010G250800 Sobic003G315700 Sobic003G315700 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic003G420300 Sobic003G420300 Sobic009G052100--Sobic003G420300 Sobic001G507200--Sobic009G052100 Sobic001G507200--Sobic009G049200 Sobic006G173200 Sobic006G173200 Sobic001G507200--Sobic006G173200 Sobic001G507200--Sobic004G315700 Sobic001G507200--Sobic006G071628 Sobic001G296800 Sobic001G296800 Sobic001G507200--Sobic001G296800 Sobic001G385400 Sobic001G385400 Sobic001G507200--Sobic001G385400 Sobic008G192700 Sobic008G192700 Sobic001G507200--Sobic008G192700 Sobic002G399900 Sobic002G399900 Sobic001G507200--Sobic002G399900 Sobic001G143600--Sobic001G385400 Sobic001G143600--Sobic009G049200 Sobic002G219900 Sobic002G219900 Sobic001G143600--Sobic002G219900 Sobic001G143600--Sobic003G250900 Sobic003G435500 Sobic003G435500 Sobic001G143600--Sobic003G435500 Sobic006G242500 Sobic006G242500 Sobic001G143600--Sobic006G242500 Sobic010G065800 Sobic010G065800 Sobic001G143600--Sobic010G065800 Sobic006G236000 Sobic006G236000 Sobic001G143600--Sobic006G236000 Sobic001G143600--Sobic001G507200 Sobic001G437400 Sobic001G437400 Sobic003G250900--Sobic001G437400 Sobic002G150800 Sobic002G150800 Sobic003G250900--Sobic002G150800 Sobic003G250900--Sobic001G143600 Sobic003G314700 Sobic003G314700 Sobic003G250900--Sobic003G314700 Sobic010G138900 Sobic010G138900 Sobic003G250900--Sobic010G138900 Sobic003G250900--Sobic009G049200 Sobic006G265600 Sobic006G265600 Sobic003G250900--Sobic006G265600 Sobic002G051800 Sobic002G051800 Sobic003G250900--Sobic002G051800 Sobic006G280100 Sobic006G280100 Sobic003G250900--Sobic006G280100 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic005G088900 Sobic005G088900 Sobic010G250800--Sobic005G088900 Sobic010G250800--Sobic009G049200 Sobic004G038100 Sobic004G038100 Sobic010G250800--Sobic004G038100 Sobic002G268700 Sobic002G268700 Sobic004G231200--Sobic002G268700 Sobic004G231200--Sobic009G049200 Sobic004G064600 Sobic004G064600 Sobic004G231200--Sobic004G064600 Sobic002G426100 Sobic002G426100 Sobic004G231200--Sobic002G426100 Sobic004G034300 Sobic004G034300 Sobic004G231200--Sobic004G034300 Sobic001G140700 Sobic001G140700 Sobic004G231200--Sobic001G140700 Sobic004G231200--Sobic006G265600 Sobic001G522000 Sobic001G522000 Sobic004G231200--Sobic001G522000 Sobic007G173000 Sobic007G173000 Sobic004G231200--Sobic007G173000 Sobic003G393100 Sobic003G393100 Sobic004G307900--Sobic003G393100 Sobic001G377700 Sobic001G377700 Sobic004G307900--Sobic001G377700 Sobic003G369200 Sobic003G369200 Sobic004G307900--Sobic003G369200 Sobic009G184200 Sobic009G184200 Sobic004G307900--Sobic009G184200 Sobic004G307900--Sobic003G423600 Sobic006G281400 Sobic006G281400 Sobic004G307900--Sobic006G281400 Sobic002G290000 Sobic002G290000 Sobic004G307900--Sobic002G290000 Sobic004G307900--Sobic004G156200 Sobic002G204400 Sobic002G204400 Sobic004G307900--Sobic002G204400 Sobic003G423600--Sobic006G281400 Sobic008G148000 Sobic008G148000 Sobic003G423600--Sobic008G148000 Sobic005G000500 Sobic005G000500 Sobic003G423600--Sobic005G000500 Sobic003G423600--Sobic004G156200 Sobic003G423600--Sobic002G204400 Sobic002G296000 Sobic002G296000 Sobic003G423600--Sobic002G296000 Sobic003G423600--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic003G423600--Sobic007G168900 Sobic005G110535 Sobic005G110535 Sobic003G423600--Sobic005G110535 Sobic008G015200--Sobic001G385400 Sobic008G015200--Sobic008G192700 Sobic002G374400 Sobic002G374400 Sobic008G015200--Sobic002G374400 Sobic002G074000 Sobic002G074000 Sobic008G015200--Sobic002G074000 Sobic008G015200--Sobic009G052100 Sobic008G015200--Sobic009G167100 Sobic006G179300 Sobic006G179300 Sobic008G015200--Sobic006G179300 Sobic002G143200 Sobic002G143200 Sobic008G015200--Sobic002G143200 Sobic008G015200--Sobic009G049200
Octagon: transcription factors


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