Gene annotation
Transcriptome id Sobic.004G231200.1
Synonym ATLSD1, ATSWP1, LDL1, LSD1, SWP1, Sb04g027490
Functional annotation amine oxidase, putative, expressed
UniProt A0A1Z5RNR0
Pfam PF13450 PF04433
Panther DB PTHR10742 PTHR10742:SF246
NCBI CDD KOG0029; Amine oxidase
KEGG Orthology K11450; KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
Gene Ontology GO:0005515; protein binding GO:0016575histone deacetylation GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G62830 : LSD1-like 1
RAP-DB (Rice) LOC_Os02g51880.1 : amine oxidase, putative, expressed
MaizeGDB (Corn) Zm00025a022155
Brachypodium KQK01834 , KQK01792
Barley HORVU6Hr1G078160.1 , HORVU6Hr1G078160.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268700 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
2 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
3 Sobic.004G064600 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
4 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
5 Sobic.004G034300 transducin family protein, putative, expressed -
6 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
7 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
8 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
9 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
10 Sobic.003G311500 double-stranded RNA binding motif containing protein, expressed -
11 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
12 Sobic.003G009200 expressed protein -
13 Sobic.006G281400 expressed protein -
14 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
15 Sobic.003G423600 expressed protein K06228: fused
16 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
17 Sobic.007G209600 ENT domain containing protein, expressed -
18 Sobic.001G203500 pentatricopeptide, putative, expressed -
19 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
20 Sobic.004G129500 expressed protein -


Gene co-expression network
sample Sobic004G231200 Sobic004G231200 Sobic002G268700 Sobic002G268700 Sobic004G231200--Sobic002G268700 Sobic009G049200 Sobic009G049200 Sobic004G231200--Sobic009G049200 Sobic004G064600 Sobic004G064600 Sobic004G231200--Sobic004G064600 Sobic002G426100 Sobic002G426100 Sobic004G231200--Sobic002G426100 Sobic004G034300 Sobic004G034300 Sobic004G231200--Sobic004G034300 Sobic001G140700 Sobic001G140700 Sobic004G231200--Sobic001G140700 Sobic006G265600 Sobic006G265600 Sobic004G231200--Sobic006G265600 Sobic001G522000 Sobic001G522000 Sobic004G231200--Sobic001G522000 Sobic007G173000 Sobic007G173000 Sobic004G231200--Sobic007G173000 Sobic002G232400 Sobic002G232400 Sobic002G268700--Sobic002G232400 Sobic001G348000 Sobic001G348000 Sobic002G268700--Sobic001G348000 Sobic002G268700--Sobic004G231200 Sobic004G069400 Sobic004G069400 Sobic002G268700--Sobic004G069400 Sobic007G048700 Sobic007G048700 Sobic002G268700--Sobic007G048700 Sobic010G080900 Sobic010G080900 Sobic002G268700--Sobic010G080900 Sobic002G070300 Sobic002G070300 Sobic002G268700--Sobic002G070300 Sobic002G268700--Sobic004G064600 Sobic002G268700--Sobic002G426100 Sobic009G052100 Sobic009G052100 Sobic009G049200--Sobic009G052100 Sobic001G507200 Sobic001G507200 Sobic009G049200--Sobic001G507200 Sobic001G143600 Sobic001G143600 Sobic009G049200--Sobic001G143600 Sobic003G250900 Sobic003G250900 Sobic009G049200--Sobic003G250900 Sobic010G250800 Sobic010G250800 Sobic009G049200--Sobic010G250800 Sobic009G049200--Sobic004G231200 Sobic004G307900 Sobic004G307900 Sobic009G049200--Sobic004G307900 Sobic003G423600 Sobic003G423600 Sobic009G049200--Sobic003G423600 Sobic008G015200 Sobic008G015200 Sobic009G049200--Sobic008G015200 Sobic006G095000 Sobic006G095000 Sobic004G064600--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic004G064600--Sobic002G192900 Sobic008G047500 Sobic008G047500 Sobic004G064600--Sobic008G047500 Sobic001G323400 Sobic001G323400 Sobic004G064600--Sobic001G323400 Sobic001G082800 Sobic001G082800 Sobic004G064600--Sobic001G082800 Sobic002G390800 Sobic002G390800 Sobic004G064600--Sobic002G390800 Sobic008G004900 Sobic008G004900 Sobic004G064600--Sobic008G004900 Sobic007G186400 Sobic007G186400 Sobic004G064600--Sobic007G186400 Sobic002G308000 Sobic002G308000 Sobic004G064600--Sobic002G308000 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic008G111600 Sobic008G111600 Sobic002G426100--Sobic008G111600 Sobic006G181800 Sobic006G181800 Sobic002G426100--Sobic006G181800 Sobic002G078100 Sobic002G078100 Sobic002G426100--Sobic002G078100 Sobic002G043000 Sobic002G043000 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic004G336300 Sobic004G336300 Sobic004G034300--Sobic004G336300 Sobic010G178600 Sobic010G178600 Sobic004G034300--Sobic010G178600 Sobic002G070600 Sobic002G070600 Sobic004G034300--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic004G034300--Sobic008G072200 Sobic005G059500 Sobic005G059500 Sobic004G034300--Sobic005G059500 Sobic009G118900 Sobic009G118900 Sobic004G034300--Sobic009G118900 Sobic003G334700 Sobic003G334700 Sobic004G034300--Sobic003G334700 Sobic004G212100 Sobic004G212100 Sobic004G034300--Sobic004G212100 Sobic001G012900 Sobic001G012900 Sobic004G034300--Sobic001G012900 Sobic007G125300 Sobic007G125300 Sobic001G140700--Sobic007G125300 Sobic001G140700--Sobic004G069400 Sobic006G094100 Sobic006G094100 Sobic001G140700--Sobic006G094100 Sobic002G236700 Sobic002G236700 Sobic001G140700--Sobic002G236700 Sobic003G212600 Sobic003G212600 Sobic001G140700--Sobic003G212600 Sobic001G268300 Sobic001G268300 Sobic001G140700--Sobic001G268300 Sobic006G120600 Sobic006G120600 Sobic001G140700--Sobic006G120600 Sobic009G087300 Sobic009G087300 Sobic001G140700--Sobic009G087300 Sobic010G250400 Sobic010G250400 Sobic001G140700--Sobic010G250400 Sobic003G397900 Sobic003G397900 Sobic006G265600--Sobic003G397900 Sobic001G474400 Sobic001G474400 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic006G265600--Sobic001G151600 Sobic002G075900 Sobic002G075900 Sobic006G265600--Sobic002G075900 Sobic002G160700 Sobic002G160700 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900 Sobic002G367800 Sobic002G367800 Sobic001G522000--Sobic002G367800 Sobic002G423500 Sobic002G423500 Sobic001G522000--Sobic002G423500 Sobic001G490500 Sobic001G490500 Sobic001G522000--Sobic001G490500 Sobic006G041100 Sobic006G041100 Sobic001G522000--Sobic006G041100 Sobic003G388900 Sobic003G388900 Sobic001G522000--Sobic003G388900 Sobic003G205400 Sobic003G205400 Sobic001G522000--Sobic003G205400 Sobic002G402500 Sobic002G402500 Sobic001G522000--Sobic002G402500 Sobic001G522000--Sobic006G265600 Sobic001G117800 Sobic001G117800 Sobic001G522000--Sobic001G117800 Sobic006G071628 Sobic006G071628 Sobic007G173000--Sobic006G071628 Sobic001G051300 Sobic001G051300 Sobic007G173000--Sobic001G051300 Sobic001G196000 Sobic001G196000 Sobic007G173000--Sobic001G196000 Sobic007G139500 Sobic007G139500 Sobic007G173000--Sobic007G139500 Sobic005G129201 Sobic005G129201 Sobic007G173000--Sobic005G129201 Sobic007G173000--Sobic002G232400 Sobic009G061000 Sobic009G061000 Sobic007G173000--Sobic009G061000 Sobic002G370400 Sobic002G370400 Sobic007G173000--Sobic002G370400 Sobic009G256700 Sobic009G256700 Sobic007G173000--Sobic009G256700
Octagon: transcription factors


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