Gene annotation
Transcriptome id Sobic.010G172400.1
Synonym Sb10g022490, AtTMN7, TMN7
Functional annotation transmembrane 9 superfamily member, putative, expressed
UniProt A0A1W0VTI5
Pfam PF02990
Panther DB PTHR10766 PTHR10766:SF1
NCBI CDD -
KEGG Orthology K17086; transmembrane 9 superfamily member 2/4
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G13772 : transmembrane nine 7
RAP-DB (Rice) LOC_Os06g37160.1 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a005641 , Zm00025a047903
Brachypodium PNT75738 , PNT75739 , KQK17748 , KQK17920
Barley HORVU7Hr1G087210.1 , HORVU7Hr1G087210.3 , HORVU7Hr1G087210.2
Wheat TraesCS5A02G359800 , TraesCS7A02G361900 , TraesCS7D02G361100 , TraesCS7B02G265400
Populus PNT32341


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cDNA sequences
Sobic.010G172400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
2 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
3 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
4 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
5 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
6 Sobic.005G114500 growth regulator related protein, putative, expressed -
7 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
8 Sobic.001G097900 expressed protein -
9 Sobic.001G012900 brefeldin A-sensitive Golgi protein-like, putative, expressed -
10 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
11 Sobic.004G129500 expressed protein -
12 Sobic.001G193100 expressed protein -
13 Sobic.002G398500 Mo25, putative, expressed K08272: CAB39, calcium binding protein 39
14 Sobic.001G343000 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
15 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
16 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
17 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
18 Sobic.009G108400 CAAX amino terminal protease family protein, putative, expressed K08658: RCE1, prenyl protein peptidase
19 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
20 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -


Gene co-expression network
sample Sobic010G172400 Sobic010G172400 Sobic001G467100 Sobic001G467100 Sobic010G172400--Sobic001G467100 Sobic003G222700 Sobic003G222700 Sobic010G172400--Sobic003G222700 Sobic002G399900 Sobic002G399900 Sobic010G172400--Sobic002G399900 Sobic006G091000 Sobic006G091000 Sobic010G172400--Sobic006G091000 Sobic002G182000 Sobic002G182000 Sobic010G172400--Sobic002G182000 Sobic005G114500 Sobic005G114500 Sobic010G172400--Sobic005G114500 Sobic001G474400 Sobic001G474400 Sobic010G172400--Sobic001G474400 Sobic001G097900 Sobic001G097900 Sobic010G172400--Sobic001G097900 Sobic001G012900 Sobic001G012900 Sobic010G172400--Sobic001G012900 Sobic004G208500 Sobic004G208500 Sobic001G467100--Sobic004G208500 Sobic001G467100--Sobic010G172400 Sobic001G467100--Sobic001G474400 Sobic001G099900 Sobic001G099900 Sobic001G467100--Sobic001G099900 Sobic001G467100--Sobic003G222700 Sobic007G145400 Sobic007G145400 Sobic001G467100--Sobic007G145400 Sobic001G467100--Sobic005G114500 Sobic001G161700 Sobic001G161700 Sobic001G467100--Sobic001G161700 Sobic005G110499 Sobic005G110499 Sobic001G467100--Sobic005G110499 Sobic004G256300 Sobic004G256300 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic007G022700 Sobic007G022700 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic001G229300 Sobic001G229300 Sobic003G222700--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic003G222700--Sobic002G142700 Sobic003G222700--Sobic002G399900 Sobic006G265600 Sobic006G265600 Sobic002G399900--Sobic006G265600 Sobic002G399900--Sobic010G172400 Sobic002G399900--Sobic002G182000 Sobic002G399900--Sobic002G142700 Sobic002G399900--Sobic003G222700 Sobic001G115500 Sobic001G115500 Sobic002G399900--Sobic001G115500 Sobic002G399900--Sobic001G474400 Sobic001G123600 Sobic001G123600 Sobic002G399900--Sobic001G123600 Sobic001G507200 Sobic001G507200 Sobic002G399900--Sobic001G507200 Sobic009G040800 Sobic009G040800 Sobic006G091000--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic006G091000--Sobic005G178950 Sobic004G353400 Sobic004G353400 Sobic006G091000--Sobic004G353400 Sobic005G040900 Sobic005G040900 Sobic006G091000--Sobic005G040900 Sobic004G347100 Sobic004G347100 Sobic006G091000--Sobic004G347100 Sobic010G074900 Sobic010G074900 Sobic006G091000--Sobic010G074900 Sobic007G139400 Sobic007G139400 Sobic006G091000--Sobic007G139400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic009G063800 Sobic009G063800 Sobic002G182000--Sobic009G063800 Sobic002G182000--Sobic002G399900 Sobic001G343000 Sobic001G343000 Sobic002G182000--Sobic001G343000 Sobic001G203600 Sobic001G203600 Sobic002G182000--Sobic001G203600 Sobic007G146600 Sobic007G146600 Sobic002G182000--Sobic007G146600 Sobic003G130900 Sobic003G130900 Sobic002G182000--Sobic003G130900 Sobic002G066800 Sobic002G066800 Sobic002G182000--Sobic002G066800 Sobic002G182000--Sobic010G172400 Sobic003G113300 Sobic003G113300 Sobic002G182000--Sobic003G113300 Sobic005G114500--Sobic003G130900 Sobic003G230600 Sobic003G230600 Sobic005G114500--Sobic003G230600 Sobic005G114500--Sobic001G474400 Sobic010G223400 Sobic010G223400 Sobic005G114500--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic005G114500--Sobic001G308400 Sobic003G005900 Sobic003G005900 Sobic005G114500--Sobic003G005900 Sobic005G059500 Sobic005G059500 Sobic005G114500--Sobic005G059500 Sobic005G114500--Sobic005G110499 Sobic009G122500 Sobic009G122500 Sobic005G114500--Sobic009G122500 Sobic001G474400--Sobic005G110499 Sobic003G397900 Sobic003G397900 Sobic001G474400--Sobic003G397900 Sobic001G474400--Sobic007G145400 Sobic001G474400--Sobic001G097900 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic001G474400--Sobic010G223400 Sobic001G474400--Sobic001G467100 Sobic001G474400--Sobic006G265600 Sobic010G192600 Sobic010G192600 Sobic001G097900--Sobic010G192600 Sobic001G097900--Sobic001G474400 Sobic001G445500 Sobic001G445500 Sobic001G097900--Sobic001G445500 Sobic006G106300 Sobic006G106300 Sobic001G097900--Sobic006G106300 Sobic001G097900--Sobic005G110499 Sobic002G227500 Sobic002G227500 Sobic001G097900--Sobic002G227500 Sobic001G097900--Sobic001G308400 Sobic009G040250 Sobic009G040250 Sobic001G097900--Sobic009G040250 Sobic001G097900--Sobic005G114500 Sobic003G293000 Sobic003G293000 Sobic001G012900--Sobic003G293000 Sobic001G193100 Sobic001G193100 Sobic001G012900--Sobic001G193100 Sobic001G012900--Sobic005G059500 Sobic001G012900--Sobic001G161700 Sobic004G060300 Sobic004G060300 Sobic001G012900--Sobic004G060300 Sobic001G012900--Sobic010G223400 Sobic003G346400 Sobic003G346400 Sobic001G012900--Sobic003G346400 Sobic001G335000 Sobic001G335000 Sobic001G012900--Sobic001G335000 Sobic001G012900--Sobic009G122500
Octagon: transcription factors


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