Gene annotation
Transcriptome id Sobic.003G222700.1,Sobic.003G222700.2
Synonym Sb03g028100
Functional annotation similar to DEAD-box ATP-dependent RNA helicase 26 (PubMedID : 29862293)
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UniProt C5XR35 , C5XR37
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF275
NCBI CDD -
KEGG Orthology K17679; ATP-dependent RNA helicase MSS116, mitochondrial
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G08610 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g43120.1 : DEAD/DEAH box helicase, putative, expressed
MaizeGDB (Corn) Zm00025a028395 , Zm00025a028394
Brachypodium KQK08754
Barley HORVU3Hr1G054730.8 , HORVU3Hr1G054730.7 , HORVU3Hr1G054730.5 , HORVU3Hr1G054730.6 , HORVU3Hr1G054730.4 , HORVU3Hr1G054730.2 , HORVU3Hr1G054730.3 , HORVU3Hr1G054730.1
Wheat TraesCS3D02G230300 , TraesCS3D02G230400 , TraesCS3D02G230400 , TraesCS3B02G252600 , TraesCS3A02G222700 , TraesCS3A02G222500 , TraesCS3B02G252700 , TraesCS3B02G252700
Populus -


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cDNA sequences
Sobic.003G222700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
2 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
3 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
4 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
5 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
6 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.001G229300 expressed protein -
8 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
9 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
10 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
11 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
12 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
13 Sobic.002G357900 expressed protein -
14 Sobic.004G084400 methyltransferase domain containing protein, expressed K14850: ribosomal RNA-processing protein 8
15 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
16 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
17 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
18 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
19 Sobic.008G018500 expressed protein -
20 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G222700 Sobic003G222700 Sobic004G256300 Sobic004G256300 Sobic003G222700--Sobic004G256300 Sobic001G467100 Sobic001G467100 Sobic003G222700--Sobic001G467100 Sobic010G172400 Sobic010G172400 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic007G022700 Sobic007G022700 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic001G229300 Sobic001G229300 Sobic003G222700--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic003G222700--Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic003G222700--Sobic002G399900 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic004G256300--Sobic007G022700 Sobic004G256300--Sobic001G229300 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic004G208500 Sobic004G208500 Sobic001G467100--Sobic004G208500 Sobic001G467100--Sobic010G172400 Sobic001G474400 Sobic001G474400 Sobic001G467100--Sobic001G474400 Sobic001G099900 Sobic001G099900 Sobic001G467100--Sobic001G099900 Sobic001G467100--Sobic003G222700 Sobic007G145400 Sobic007G145400 Sobic001G467100--Sobic007G145400 Sobic005G114500 Sobic005G114500 Sobic001G467100--Sobic005G114500 Sobic001G161700 Sobic001G161700 Sobic001G467100--Sobic001G161700 Sobic005G110499 Sobic005G110499 Sobic001G467100--Sobic005G110499 Sobic010G172400--Sobic001G467100 Sobic010G172400--Sobic003G222700 Sobic010G172400--Sobic002G399900 Sobic006G091000 Sobic006G091000 Sobic010G172400--Sobic006G091000 Sobic002G182000 Sobic002G182000 Sobic010G172400--Sobic002G182000 Sobic010G172400--Sobic005G114500 Sobic010G172400--Sobic001G474400 Sobic001G097900 Sobic001G097900 Sobic010G172400--Sobic001G097900 Sobic001G012900 Sobic001G012900 Sobic010G172400--Sobic001G012900 Sobic001G193100 Sobic001G193100 Sobic001G061200--Sobic001G193100 Sobic001G061200--Sobic007G173700 Sobic001G061200--Sobic003G222700 Sobic009G207200 Sobic009G207200 Sobic001G061200--Sobic009G207200 Sobic008G129600 Sobic008G129600 Sobic001G061200--Sobic008G129600 Sobic002G276800 Sobic002G276800 Sobic001G061200--Sobic002G276800 Sobic002G029300 Sobic002G029300 Sobic001G061200--Sobic002G029300 Sobic003G148900 Sobic003G148900 Sobic001G061200--Sobic003G148900 Sobic001G023100 Sobic001G023100 Sobic001G061200--Sobic001G023100 Sobic007G022700--Sobic004G256300 Sobic007G022700--Sobic003G222700 Sobic003G085500 Sobic003G085500 Sobic007G022700--Sobic003G085500 Sobic002G232400 Sobic002G232400 Sobic007G022700--Sobic002G232400 Sobic007G022700--Sobic009G207200 Sobic004G186100 Sobic004G186100 Sobic007G022700--Sobic004G186100 Sobic001G191900 Sobic001G191900 Sobic007G022700--Sobic001G191900 Sobic006G259900 Sobic006G259900 Sobic007G022700--Sobic006G259900 Sobic003G005900 Sobic003G005900 Sobic007G022700--Sobic003G005900 Sobic007G173700--Sobic002G029300 Sobic004G000100 Sobic004G000100 Sobic007G173700--Sobic004G000100 Sobic007G173700--Sobic001G023100 Sobic007G173700--Sobic001G193100 Sobic007G173700--Sobic001G161700 Sobic007G173700--Sobic001G061200 Sobic002G141700 Sobic002G141700 Sobic007G173700--Sobic002G141700 Sobic001G049400 Sobic001G049400 Sobic007G173700--Sobic001G049400 Sobic003G394200 Sobic003G394200 Sobic007G173700--Sobic003G394200 Sobic001G123600 Sobic001G123600 Sobic001G229300--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic001G229300--Sobic003G129300 Sobic004G354100 Sobic004G354100 Sobic001G229300--Sobic004G354100 Sobic001G229300--Sobic004G256300 Sobic003G010900 Sobic003G010900 Sobic001G229300--Sobic003G010900 Sobic002G066800 Sobic002G066800 Sobic001G229300--Sobic002G066800 Sobic001G229300--Sobic003G222700 Sobic001G229300--Sobic002G142700 Sobic006G106600 Sobic006G106600 Sobic001G229300--Sobic006G106600 Sobic002G142700--Sobic002G399900 Sobic007G051400 Sobic007G051400 Sobic002G142700--Sobic007G051400 Sobic002G208400 Sobic002G208400 Sobic002G142700--Sobic002G208400 Sobic002G142700--Sobic004G256300 Sobic002G142700--Sobic003G221500 Sobic002G142700--Sobic003G222700 Sobic002G142700--Sobic001G229300 Sobic001G373000 Sobic001G373000 Sobic002G142700--Sobic001G373000 Sobic003G360300 Sobic003G360300 Sobic002G142700--Sobic003G360300 Sobic006G265600 Sobic006G265600 Sobic002G399900--Sobic006G265600 Sobic002G399900--Sobic010G172400 Sobic002G399900--Sobic002G182000 Sobic002G399900--Sobic002G142700 Sobic002G399900--Sobic003G222700 Sobic001G115500 Sobic001G115500 Sobic002G399900--Sobic001G115500 Sobic002G399900--Sobic001G474400 Sobic002G399900--Sobic001G123600 Sobic001G507200 Sobic001G507200 Sobic002G399900--Sobic001G507200
Octagon: transcription factors


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