Gene annotation
Transcriptome id Sobic.001G487100.1
Synonym Sb01g045570
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WVW4
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF333
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G19350 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g07800.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000873
Brachypodium KQJ82883 , KQK23375
Barley HORVU4Hr1G075700.9 , HORVU4Hr1G075700.8 , HORVU4Hr1G075700.7 , HORVU4Hr1G075700.6 , HORVU4Hr1G075700.1 , HORVU4Hr1G075700.2 , HORVU4Hr1G075700.5 , HORVU4Hr1G075700.3 , HORVU4Hr1G075700.4
Wheat TraesCS4A02G014200 , TraesCS4B02G289600 , TraesCS4D02G288600 , TraesCS4D02G288600 , TraesCS4D02G288600 , TraesCS4D02G288600
Populus -


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cDNA sequences
Sobic.001G487100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
2 Sobic.004G320100 expressed protein -
3 Sobic.006G049100 expressed protein -
4 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
5 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
6 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
7 Sobic.003G128300 NEDD8-activating enzyme E1 catalytic subunit, putative, expressed K10686: UBE1C, ubiquitin-activating enzyme E1 C
8 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
9 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
10 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
11 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
12 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
13 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
14 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
15 Sobic.005G175000 glutathione S-transferase, N-terminal domain containing protein, expressed K00799: GST, glutathione S-transferase
16 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
17 Sobic.002G361400 frigida, putative, expressed -
18 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
19 Sobic.002G199400 growth regulator related protein, putative, expressed -
20 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C


Gene co-expression network
sample Sobic001G487100 Sobic001G487100 Sobic003G132000 Sobic003G132000 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic003G046300 Sobic003G046300 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic001G114500 Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic004G320100--Sobic001G487100 Sobic010G154000 Sobic010G154000 Sobic004G320100--Sobic010G154000 Sobic004G320100--Sobic003G132000 Sobic004G320100--Sobic006G049100 Sobic004G320100--Sobic003G128300 Sobic006G008800 Sobic006G008800 Sobic004G320100--Sobic006G008800 Sobic004G320100--Sobic006G270600 Sobic003G212900 Sobic003G212900 Sobic004G320100--Sobic003G212900 Sobic004G320100--Sobic003G121300 Sobic010G077500 Sobic010G077500 Sobic006G049100--Sobic010G077500 Sobic001G042200 Sobic001G042200 Sobic006G049100--Sobic001G042200 Sobic006G049100--Sobic001G487100 Sobic007G056500 Sobic007G056500 Sobic006G049100--Sobic007G056500 Sobic001G168900 Sobic001G168900 Sobic006G049100--Sobic001G168900 Sobic004G345400 Sobic004G345400 Sobic006G049100--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic006G049100--Sobic007G187600 Sobic006G049100--Sobic003G132000 Sobic001G395100 Sobic001G395100 Sobic006G049100--Sobic001G395100 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic003G046300--Sobic008G103300 Sobic002G142900 Sobic002G142900 Sobic003G046300--Sobic002G142900 Sobic003G046300--Sobic002G371700 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic003G046300--Sobic001G487100 Sobic003G121300--Sobic001G114500 Sobic010G237900 Sobic010G237900 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic005G160400 Sobic005G160400 Sobic003G121300--Sobic005G160400 Sobic003G121300--Sobic003G132000 Sobic003G121300--Sobic001G487100 Sobic004G156800 Sobic004G156800 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic003G121300--Sobic009G164000 Sobic001G506000--Sobic001G487100 Sobic004G075200 Sobic004G075200 Sobic001G506000--Sobic004G075200 Sobic001G115500 Sobic001G115500 Sobic001G506000--Sobic001G115500 Sobic005G175000 Sobic005G175000 Sobic001G506000--Sobic005G175000 Sobic009G207200 Sobic009G207200 Sobic001G506000--Sobic009G207200 Sobic003G122000 Sobic003G122000 Sobic001G506000--Sobic003G122000 Sobic001G469200 Sobic001G469200 Sobic001G506000--Sobic001G469200 Sobic007G165300 Sobic007G165300 Sobic001G506000--Sobic007G165300 Sobic002G280900 Sobic002G280900 Sobic001G506000--Sobic002G280900 Sobic003G128300--Sobic003G132000 Sobic001G458200 Sobic001G458200 Sobic003G128300--Sobic001G458200 Sobic003G128300--Sobic001G487100 Sobic003G148900 Sobic003G148900 Sobic003G128300--Sobic003G148900 Sobic003G128300--Sobic004G320100 Sobic003G128300--Sobic003G046300 Sobic002G306600 Sobic002G306600 Sobic003G128300--Sobic002G306600 Sobic003G128300--Sobic008G103300 Sobic009G258400 Sobic009G258400 Sobic003G128300--Sobic009G258400 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic003G222700 Sobic003G222700 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic007G022700 Sobic007G022700 Sobic004G256300--Sobic007G022700 Sobic001G229300 Sobic001G229300 Sobic004G256300--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic004G256300--Sobic002G142700 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic001G291800 Sobic001G291800 Sobic005G115500--Sobic001G291800 Sobic001G145400 Sobic001G145400 Sobic005G115500--Sobic001G145400 Sobic001G248100 Sobic001G248100 Sobic005G115500--Sobic001G248100 Sobic002G145800 Sobic002G145800 Sobic005G115500--Sobic002G145800 Sobic003G099300 Sobic003G099300 Sobic005G115500--Sobic003G099300 Sobic007G183300 Sobic007G183300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic002G430300 Sobic002G430300 Sobic005G115500--Sobic002G430300 Sobic001G051700 Sobic001G051700 Sobic005G115500--Sobic001G051700
Octagon: transcription factors


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