Gene annotation
Transcriptome id Sobic.004G320100.1,Sobic.004G320100.2
Synonym Sb04g035070
Functional annotation expressed protein
UniProt C5XTN8 , A0A1Z5RQG5
Pfam -
Panther DB PTHR31789 PTHR31789:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54190 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g54090.1 : expressed protein
MaizeGDB (Corn) Zm00025a022362
Brachypodium PNT69690 , KQK02052
Barley HORVU6Hr1G082150.8 , HORVU6Hr1G082150.9 , HORVU6Hr1G082150.4 , HORVU6Hr1G082150.5 , HORVU6Hr1G082150.6 , HORVU6Hr1G082150.7 , HORVU6Hr1G082150.1 , HORVU6Hr1G082150.2 , HORVU6Hr1G082150.3
Wheat TraesCS6B02G371900
Populus -


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cDNA sequences
Sobic.004G320100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
2 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
3 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
4 Sobic.006G049100 expressed protein -
5 Sobic.003G128300 NEDD8-activating enzyme E1 catalytic subunit, putative, expressed K10686: UBE1C, ubiquitin-activating enzyme E1 C
6 Sobic.006G008800 E2F family transcription factor protein, putative, expressed K06620: transcription factor E2F3
7 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
8 Sobic.003G212900 zinc ion binding protein, putative, expressed -
9 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
10 Sobic.001G542450 - -
11 Sobic.004G192900 expressed protein -
12 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
13 Sobic.009G159000 phosphatidic acid phosphatase-related, putative, expressed -
14 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
15 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
16 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
17 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
18 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
19 Sobic.003G221500 CENP-C1, putative, expressed -
20 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4


Gene co-expression network
sample Sobic004G320100 Sobic004G320100 Sobic001G487100 Sobic001G487100 Sobic004G320100--Sobic001G487100 Sobic010G154000 Sobic010G154000 Sobic004G320100--Sobic010G154000 Sobic003G132000 Sobic003G132000 Sobic004G320100--Sobic003G132000 Sobic006G049100 Sobic006G049100 Sobic004G320100--Sobic006G049100 Sobic003G128300 Sobic003G128300 Sobic004G320100--Sobic003G128300 Sobic006G008800 Sobic006G008800 Sobic004G320100--Sobic006G008800 Sobic006G270600 Sobic006G270600 Sobic004G320100--Sobic006G270600 Sobic003G212900 Sobic003G212900 Sobic004G320100--Sobic003G212900 Sobic003G121300 Sobic003G121300 Sobic004G320100--Sobic003G121300 Sobic001G487100--Sobic003G132000 Sobic001G487100--Sobic004G320100 Sobic001G487100--Sobic006G049100 Sobic003G046300 Sobic003G046300 Sobic001G487100--Sobic003G046300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic010G154000--Sobic004G320100 Sobic006G120800 Sobic006G120800 Sobic010G154000--Sobic006G120800 Sobic001G507400 Sobic001G507400 Sobic010G154000--Sobic001G507400 Sobic010G154000--Sobic006G049100 Sobic010G154000--Sobic001G487100 Sobic006G245700 Sobic006G245700 Sobic010G154000--Sobic006G245700 Sobic003G221500 Sobic003G221500 Sobic010G154000--Sobic003G221500 Sobic009G258400 Sobic009G258400 Sobic010G154000--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic010G154000--Sobic004G212700 Sobic001G114500 Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic003G132000--Sobic006G270600 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic010G077500 Sobic010G077500 Sobic006G049100--Sobic010G077500 Sobic001G042200 Sobic001G042200 Sobic006G049100--Sobic001G042200 Sobic006G049100--Sobic001G487100 Sobic007G056500 Sobic007G056500 Sobic006G049100--Sobic007G056500 Sobic001G168900 Sobic001G168900 Sobic006G049100--Sobic001G168900 Sobic004G345400 Sobic004G345400 Sobic006G049100--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic006G049100--Sobic007G187600 Sobic006G049100--Sobic003G132000 Sobic001G395100 Sobic001G395100 Sobic006G049100--Sobic001G395100 Sobic003G128300--Sobic003G132000 Sobic001G458200 Sobic001G458200 Sobic003G128300--Sobic001G458200 Sobic003G128300--Sobic001G487100 Sobic003G148900 Sobic003G148900 Sobic003G128300--Sobic003G148900 Sobic003G128300--Sobic004G320100 Sobic003G128300--Sobic003G046300 Sobic002G306600 Sobic002G306600 Sobic003G128300--Sobic002G306600 Sobic003G128300--Sobic008G103300 Sobic003G128300--Sobic009G258400 Sobic006G008800--Sobic004G320100 Sobic002G076100 Sobic002G076100 Sobic006G008800--Sobic002G076100 Sobic009G159000 Sobic009G159000 Sobic006G008800--Sobic009G159000 Sobic002G263200 Sobic002G263200 Sobic006G008800--Sobic002G263200 Sobic006G008800--Sobic010G154000 Sobic006G008800--Sobic009G258400 Sobic006G008800--Sobic001G507400 Sobic006G008800--Sobic001G395100 Sobic008G111700 Sobic008G111700 Sobic006G008800--Sobic008G111700 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic006G270600--Sobic003G132000 Sobic001G259000 Sobic001G259000 Sobic006G270600--Sobic001G259000 Sobic010G264000 Sobic010G264000 Sobic006G270600--Sobic010G264000 Sobic002G295500 Sobic002G295500 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic006G270600--Sobic001G114500 Sobic001G135500 Sobic001G135500 Sobic003G212900--Sobic001G135500 Sobic003G212900--Sobic010G077500 Sobic002G422100 Sobic002G422100 Sobic003G212900--Sobic002G422100 Sobic003G416700 Sobic003G416700 Sobic003G212900--Sobic003G416700 Sobic003G212900--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic003G212900--Sobic004G309900 Sobic006G224800 Sobic006G224800 Sobic003G212900--Sobic006G224800 Sobic008G058800 Sobic008G058800 Sobic003G212900--Sobic008G058800 Sobic003G212900--Sobic002G295500 Sobic003G121300--Sobic001G114500 Sobic010G237900 Sobic010G237900 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic005G160400 Sobic005G160400 Sobic003G121300--Sobic005G160400 Sobic003G121300--Sobic003G132000 Sobic003G121300--Sobic001G487100 Sobic004G156800 Sobic004G156800 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic003G121300--Sobic009G164000
Octagon: transcription factors


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