Gene annotation
Transcriptome id Sobic.006G008800.1
Synonym ATE2FB, Sb06g000890, E2F1, E2FB
Functional annotation E2F family transcription factor protein, putative, expressed
UniProt C5YBP5
Pfam PF02319 PF16421
Panther DB PTHR12081 PTHR12081:SF49
NCBI CDD KOG2577; Transcription factor E2F/dimerization partner (TDP)
KEGG Orthology K06620; transcription factor E2F3
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005667transcription regulator complex GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G22220 : E2F transcription factor 1
RAP-DB (Rice) LOC_Os04g02140.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a012207
Brachypodium KQJ81633 , PNT60585
Barley HORVU2Hr1G004820.1
Wheat TraesCS2B02G043500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G320100 expressed protein -
2 Sobic.002G076100 transcription factor, putative, expressed K09060: plant G-box-binding factor
3 Sobic.009G159000 phosphatidic acid phosphatase-related, putative, expressed -
4 Sobic.002G263200 expressed protein -
5 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
6 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
7 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
8 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
9 Sobic.008G111700 expressed protein -
10 Sobic.003G253400 expressed protein -
11 Sobic.010G029900 leucine carboxyl methyltransferase 1, putative, expressed K15451: PPM2, LCMT2, tRNA wybutosine-synthesizing protein 4
12 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
13 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
14 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
15 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
16 Sobic.005G150900 growth regulating factor protein, putative, expressed -
17 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
18 Sobic.008G042700 E2F family transcription factor protein, putative, expressed K06620: transcription factor E2F3
19 Sobic.001G542450 - -
20 Sobic.001G456300 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase


Gene co-expression network
sample Sobic006G008800 Sobic006G008800 Sobic004G320100 Sobic004G320100 Sobic006G008800--Sobic004G320100 Sobic002G076100 Sobic002G076100 Sobic006G008800--Sobic002G076100 Sobic009G159000 Sobic009G159000 Sobic006G008800--Sobic009G159000 Sobic002G263200 Sobic002G263200 Sobic006G008800--Sobic002G263200 Sobic010G154000 Sobic010G154000 Sobic006G008800--Sobic010G154000 Sobic009G258400 Sobic009G258400 Sobic006G008800--Sobic009G258400 Sobic001G507400 Sobic001G507400 Sobic006G008800--Sobic001G507400 Sobic001G395100 Sobic001G395100 Sobic006G008800--Sobic001G395100 Sobic008G111700 Sobic008G111700 Sobic006G008800--Sobic008G111700 Sobic001G487100 Sobic001G487100 Sobic004G320100--Sobic001G487100 Sobic004G320100--Sobic010G154000 Sobic003G132000 Sobic003G132000 Sobic004G320100--Sobic003G132000 Sobic006G049100 Sobic006G049100 Sobic004G320100--Sobic006G049100 Sobic003G128300 Sobic003G128300 Sobic004G320100--Sobic003G128300 Sobic004G320100--Sobic006G008800 Sobic006G270600 Sobic006G270600 Sobic004G320100--Sobic006G270600 Sobic003G212900 Sobic003G212900 Sobic004G320100--Sobic003G212900 Sobic003G121300 Sobic003G121300 Sobic004G320100--Sobic003G121300 Sobic002G076100--Sobic006G008800 Sobic007G125700 Sobic007G125700 Sobic002G076100--Sobic007G125700 Sobic004G229100 Sobic004G229100 Sobic002G076100--Sobic004G229100 Sobic002G430900 Sobic002G430900 Sobic002G076100--Sobic002G430900 Sobic009G192500 Sobic009G192500 Sobic002G076100--Sobic009G192500 Sobic003G323300 Sobic003G323300 Sobic002G076100--Sobic003G323300 Sobic003G253400 Sobic003G253400 Sobic002G076100--Sobic003G253400 Sobic010G279900 Sobic010G279900 Sobic002G076100--Sobic010G279900 Sobic008G044600 Sobic008G044600 Sobic002G076100--Sobic008G044600 Sobic002G223800 Sobic002G223800 Sobic009G159000--Sobic002G223800 Sobic008G058800 Sobic008G058800 Sobic009G159000--Sobic008G058800 Sobic004G323700 Sobic004G323700 Sobic009G159000--Sobic004G323700 Sobic009G159000--Sobic004G320100 Sobic001G542450 Sobic001G542450 Sobic009G159000--Sobic001G542450 Sobic001G135500 Sobic001G135500 Sobic009G159000--Sobic001G135500 Sobic009G159000--Sobic003G212900 Sobic002G313900 Sobic002G313900 Sobic009G159000--Sobic002G313900 Sobic001G005600 Sobic001G005600 Sobic009G159000--Sobic001G005600 Sobic001G373000 Sobic001G373000 Sobic002G263200--Sobic001G373000 Sobic004G006600 Sobic004G006600 Sobic002G263200--Sobic004G006600 Sobic010G186600 Sobic010G186600 Sobic002G263200--Sobic010G186600 Sobic001G023800 Sobic001G023800 Sobic002G263200--Sobic001G023800 Sobic003G408300 Sobic003G408300 Sobic002G263200--Sobic003G408300 Sobic009G143800 Sobic009G143800 Sobic002G263200--Sobic009G143800 Sobic005G047300 Sobic005G047300 Sobic002G263200--Sobic005G047300 Sobic001G013300 Sobic001G013300 Sobic002G263200--Sobic001G013300 Sobic001G346900 Sobic001G346900 Sobic002G263200--Sobic001G346900 Sobic010G154000--Sobic004G320100 Sobic006G120800 Sobic006G120800 Sobic010G154000--Sobic006G120800 Sobic010G154000--Sobic001G507400 Sobic010G154000--Sobic006G049100 Sobic010G154000--Sobic001G487100 Sobic006G245700 Sobic006G245700 Sobic010G154000--Sobic006G245700 Sobic003G221500 Sobic003G221500 Sobic010G154000--Sobic003G221500 Sobic010G154000--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic010G154000--Sobic004G212700 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic009G258400--Sobic003G132000 Sobic009G258400--Sobic001G507400 Sobic001G038100 Sobic001G038100 Sobic001G507400--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic001G507400--Sobic006G120800 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic003G420700 Sobic003G420700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic001G507400--Sobic010G154000 Sobic006G121300 Sobic006G121300 Sobic001G395100--Sobic006G121300 Sobic002G034600 Sobic002G034600 Sobic001G395100--Sobic002G034600 Sobic001G395100--Sobic007G191700 Sobic001G473600 Sobic001G473600 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic007G056500 Sobic007G056500 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G042200 Sobic001G042200 Sobic001G395100--Sobic001G042200 Sobic001G285300 Sobic001G285300 Sobic008G111700--Sobic001G285300 Sobic003G038600 Sobic003G038600 Sobic008G111700--Sobic003G038600 Sobic001G448200 Sobic001G448200 Sobic008G111700--Sobic001G448200 Sobic001G349400 Sobic001G349400 Sobic008G111700--Sobic001G349400 Sobic003G247900 Sobic003G247900 Sobic008G111700--Sobic003G247900 Sobic003G031200 Sobic003G031200 Sobic008G111700--Sobic003G031200 Sobic003G043400 Sobic003G043400 Sobic008G111700--Sobic003G043400 Sobic006G094600 Sobic006G094600 Sobic008G111700--Sobic006G094600 Sobic006G261100 Sobic006G261100 Sobic008G111700--Sobic006G261100
Octagon: transcription factors


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