Gene annotation
Transcriptome id Sobic.003G253400.1
Synonym Sb03g030870
Functional annotation expressed protein
UniProt A0A1B6Q598
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF121
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G04790 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g48310.1 : expressed protein
MaizeGDB (Corn) Zm00025a038798 , Zm00025a028083
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G279900 PHD-finger domain containing protein, expressed -
2 Sobic.003G062400 PHD finger protein, putative, expressed -
3 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
4 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
5 Sobic.005G025800 dual specificity protein phosphatase, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
6 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
7 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
8 Sobic.007G183300 expressed protein -
9 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
10 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
11 Sobic.006G120800 transglutaminase, putative, expressed -
12 Sobic.006G248500 expressed protein -
13 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
14 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
15 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
16 Sobic.009G045200 double-stranded RNA binding motif containing protein, expressed -
17 Sobic.002G223800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
18 Sobic.007G027700 expressed protein -
19 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
20 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G253400 Sobic003G253400 Sobic010G279900 Sobic010G279900 Sobic003G253400--Sobic010G279900 Sobic003G062400 Sobic003G062400 Sobic003G253400--Sobic003G062400 Sobic001G395100 Sobic001G395100 Sobic003G253400--Sobic001G395100 Sobic005G040900 Sobic005G040900 Sobic003G253400--Sobic005G040900 Sobic005G025800 Sobic005G025800 Sobic003G253400--Sobic005G025800 Sobic009G192500 Sobic009G192500 Sobic003G253400--Sobic009G192500 Sobic004G347100 Sobic004G347100 Sobic003G253400--Sobic004G347100 Sobic007G183300 Sobic007G183300 Sobic003G253400--Sobic007G183300 Sobic008G058800 Sobic008G058800 Sobic003G253400--Sobic008G058800 Sobic004G156500 Sobic004G156500 Sobic010G279900--Sobic004G156500 Sobic010G279900--Sobic007G183300 Sobic004G086200 Sobic004G086200 Sobic010G279900--Sobic004G086200 Sobic001G367100 Sobic001G367100 Sobic010G279900--Sobic001G367100 Sobic007G027700 Sobic007G027700 Sobic010G279900--Sobic007G027700 Sobic003G409200 Sobic003G409200 Sobic010G279900--Sobic003G409200 Sobic010G279900--Sobic003G253400 Sobic003G416700 Sobic003G416700 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic003G062400--Sobic003G253400 Sobic008G160500 Sobic008G160500 Sobic003G062400--Sobic008G160500 Sobic004G145600 Sobic004G145600 Sobic003G062400--Sobic004G145600 Sobic003G038600 Sobic003G038600 Sobic003G062400--Sobic003G038600 Sobic001G005600 Sobic001G005600 Sobic003G062400--Sobic001G005600 Sobic004G068500 Sobic004G068500 Sobic003G062400--Sobic004G068500 Sobic009G125000 Sobic009G125000 Sobic003G062400--Sobic009G125000 Sobic002G267400 Sobic002G267400 Sobic003G062400--Sobic002G267400 Sobic002G357900 Sobic002G357900 Sobic003G062400--Sobic002G357900 Sobic006G121300 Sobic006G121300 Sobic001G395100--Sobic006G121300 Sobic002G034600 Sobic002G034600 Sobic001G395100--Sobic002G034600 Sobic007G191700 Sobic007G191700 Sobic001G395100--Sobic007G191700 Sobic001G473600 Sobic001G473600 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic001G395100--Sobic007G027700 Sobic007G056500 Sobic007G056500 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G042200 Sobic001G042200 Sobic001G395100--Sobic001G042200 Sobic009G040800 Sobic009G040800 Sobic005G040900--Sobic009G040800 Sobic006G091000 Sobic006G091000 Sobic005G040900--Sobic006G091000 Sobic005G040900--Sobic004G347100 Sobic007G139400 Sobic007G139400 Sobic005G040900--Sobic007G139400 Sobic010G074900 Sobic010G074900 Sobic005G040900--Sobic010G074900 Sobic003G205501 Sobic003G205501 Sobic005G040900--Sobic003G205501 Sobic004G345400 Sobic004G345400 Sobic005G040900--Sobic004G345400 Sobic001G472100 Sobic001G472100 Sobic005G040900--Sobic001G472100 Sobic009G129600 Sobic009G129600 Sobic005G040900--Sobic009G129600 Sobic005G025800--Sobic007G027700 Sobic001G226000 Sobic001G226000 Sobic005G025800--Sobic001G226000 Sobic009G001100 Sobic009G001100 Sobic005G025800--Sobic009G001100 Sobic005G025800--Sobic003G253400 Sobic007G119900 Sobic007G119900 Sobic005G025800--Sobic007G119900 Sobic004G133700 Sobic004G133700 Sobic005G025800--Sobic004G133700 Sobic005G025800--Sobic007G191700 Sobic005G025800--Sobic001G469800 Sobic006G267300 Sobic006G267300 Sobic005G025800--Sobic006G267300 Sobic003G132700 Sobic003G132700 Sobic009G192500--Sobic003G132700 Sobic007G117100 Sobic007G117100 Sobic009G192500--Sobic007G117100 Sobic002G430900 Sobic002G430900 Sobic009G192500--Sobic002G430900 Sobic009G022100 Sobic009G022100 Sobic009G192500--Sobic009G022100 Sobic007G125700 Sobic007G125700 Sobic009G192500--Sobic007G125700 Sobic002G095700 Sobic002G095700 Sobic009G192500--Sobic002G095700 Sobic009G192500--Sobic003G253400 Sobic002G223300 Sobic002G223300 Sobic009G192500--Sobic002G223300 Sobic004G229100 Sobic004G229100 Sobic009G192500--Sobic004G229100 Sobic004G347100--Sobic007G139400 Sobic004G347100--Sobic006G248500 Sobic004G347100--Sobic006G091000 Sobic009G044900 Sobic009G044900 Sobic004G347100--Sobic009G044900 Sobic004G347100--Sobic005G040900 Sobic004G347100--Sobic009G129600 Sobic009G151200 Sobic009G151200 Sobic004G347100--Sobic009G151200 Sobic004G347100--Sobic009G040800 Sobic003G336800 Sobic003G336800 Sobic004G347100--Sobic003G336800 Sobic005G200800 Sobic005G200800 Sobic007G183300--Sobic005G200800 Sobic002G145800 Sobic002G145800 Sobic007G183300--Sobic002G145800 Sobic007G183300--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic007G183300--Sobic003G214600 Sobic007G183300--Sobic010G279900 Sobic002G154000 Sobic002G154000 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic001G051700 Sobic001G051700 Sobic007G183300--Sobic001G051700 Sobic008G058800--Sobic001G042200 Sobic008G058800--Sobic009G129600 Sobic008G058800--Sobic006G248500 Sobic008G058800--Sobic003G205501 Sobic010G077500 Sobic010G077500 Sobic008G058800--Sobic010G077500 Sobic002G264200 Sobic002G264200 Sobic008G058800--Sobic002G264200 Sobic007G026000 Sobic007G026000 Sobic008G058800--Sobic007G026000 Sobic008G127400 Sobic008G127400 Sobic008G058800--Sobic008G127400 Sobic004G180900 Sobic004G180900 Sobic008G058800--Sobic004G180900
Octagon: transcription factors


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