Gene annotation
Transcriptome id Sobic.003G062400.2,Sobic.003G062400.1
Synonym AL2, Sb03g005320
Functional annotation PHD finger protein, putative, expressed
UniProt C5XP83
Pfam PF00628 PF12165
Panther DB PTHR12321 PTHR12321:SF37
NCBI CDD KOG1632; Uncharacterized PHD Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G05610 : alfin-like 1
RAP-DB (Rice) LOC_Os05g07040.1 : PHD finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a042928 , Zm00025a035663 , Zm00025a038035
Brachypodium KQK07333
Barley HORVU1Hr1G024210.4 , HORVU1Hr1G024210.5 , HORVU1Hr1G024210.1 , HORVU1Hr1G024210.2 , HORVU1Hr1G024210.3
Wheat TraesCS1B02G129400 , TraesCS1D02G111700 , TraesCS1A02G110200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G062400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G253400 expressed protein -
2 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
3 Sobic.004G145600 expressed protein -
4 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
5 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
6 Sobic.004G068500 CUE domain containing protein, expressed -
7 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
8 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
9 Sobic.002G357900 expressed protein -
10 Sobic.001G205900 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
11 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
12 Sobic.002G223800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
13 Sobic.004G358900 Sec1 family transport protein, putative, expressed -
14 Sobic.008G111700 expressed protein -
15 Sobic.009G160600 Yip1 domain containing protein, expressed -
16 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
17 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
18 Sobic.004G067400 expressed protein -
19 Sobic.002G277300 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
20 Sobic.008G021000 exostosin family domain containing protein, expressed -


Gene co-expression network
sample Sobic003G062400 Sobic003G062400 Sobic003G253400 Sobic003G253400 Sobic003G062400--Sobic003G253400 Sobic008G160500 Sobic008G160500 Sobic003G062400--Sobic008G160500 Sobic004G145600 Sobic004G145600 Sobic003G062400--Sobic004G145600 Sobic003G038600 Sobic003G038600 Sobic003G062400--Sobic003G038600 Sobic001G005600 Sobic001G005600 Sobic003G062400--Sobic001G005600 Sobic004G068500 Sobic004G068500 Sobic003G062400--Sobic004G068500 Sobic009G125000 Sobic009G125000 Sobic003G062400--Sobic009G125000 Sobic002G267400 Sobic002G267400 Sobic003G062400--Sobic002G267400 Sobic002G357900 Sobic002G357900 Sobic003G062400--Sobic002G357900 Sobic010G279900 Sobic010G279900 Sobic003G253400--Sobic010G279900 Sobic003G253400--Sobic003G062400 Sobic001G395100 Sobic001G395100 Sobic003G253400--Sobic001G395100 Sobic005G040900 Sobic005G040900 Sobic003G253400--Sobic005G040900 Sobic005G025800 Sobic005G025800 Sobic003G253400--Sobic005G025800 Sobic009G192500 Sobic009G192500 Sobic003G253400--Sobic009G192500 Sobic004G347100 Sobic004G347100 Sobic003G253400--Sobic004G347100 Sobic007G183300 Sobic007G183300 Sobic003G253400--Sobic007G183300 Sobic008G058800 Sobic008G058800 Sobic003G253400--Sobic008G058800 Sobic008G160500--Sobic003G062400 Sobic008G160500--Sobic001G005600 Sobic009G030400 Sobic009G030400 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic002G359900 Sobic002G359900 Sobic008G160500--Sobic002G359900 Sobic002G403200 Sobic002G403200 Sobic008G160500--Sobic002G403200 Sobic003G004500 Sobic003G004500 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic001G033400 Sobic001G033400 Sobic008G160500--Sobic001G033400 Sobic007G036800 Sobic007G036800 Sobic004G145600--Sobic007G036800 Sobic003G010900 Sobic003G010900 Sobic004G145600--Sobic003G010900 Sobic004G084400 Sobic004G084400 Sobic004G145600--Sobic004G084400 Sobic003G005900 Sobic003G005900 Sobic004G145600--Sobic003G005900 Sobic004G145600--Sobic005G040900 Sobic004G145600--Sobic003G062400 Sobic007G148400 Sobic007G148400 Sobic004G145600--Sobic007G148400 Sobic003G222700 Sobic003G222700 Sobic004G145600--Sobic003G222700 Sobic010G059700 Sobic010G059700 Sobic004G145600--Sobic010G059700 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic010G017000 Sobic010G017000 Sobic003G038600--Sobic010G017000 Sobic002G272600 Sobic002G272600 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic009G160600 Sobic009G160600 Sobic001G005600--Sobic009G160600 Sobic010G129600 Sobic010G129600 Sobic001G005600--Sobic010G129600 Sobic007G042900 Sobic007G042900 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic003G150900 Sobic003G150900 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic001G005600--Sobic004G068500 Sobic008G021000 Sobic008G021000 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900 Sobic004G068500--Sobic007G111100 Sobic002G262700 Sobic002G262700 Sobic004G068500--Sobic002G262700 Sobic004G068500--Sobic001G005600 Sobic002G177000 Sobic002G177000 Sobic004G068500--Sobic002G177000 Sobic007G046200 Sobic007G046200 Sobic004G068500--Sobic007G046200 Sobic001G042200 Sobic001G042200 Sobic004G068500--Sobic001G042200 Sobic004G068500--Sobic007G042900 Sobic003G051200 Sobic003G051200 Sobic004G068500--Sobic003G051200 Sobic001G517500 Sobic001G517500 Sobic004G068500--Sobic001G517500 Sobic009G059400 Sobic009G059400 Sobic009G125000--Sobic009G059400 Sobic004G345400 Sobic004G345400 Sobic009G125000--Sobic004G345400 Sobic001G472100 Sobic001G472100 Sobic009G125000--Sobic001G472100 Sobic004G180900 Sobic004G180900 Sobic009G125000--Sobic004G180900 Sobic009G125000--Sobic005G040900 Sobic009G125000--Sobic001G042200 Sobic009G040800 Sobic009G040800 Sobic009G125000--Sobic009G040800 Sobic009G125000--Sobic003G062400 Sobic005G198200 Sobic005G198200 Sobic009G125000--Sobic005G198200 Sobic003G148900 Sobic003G148900 Sobic002G267400--Sobic003G148900 Sobic002G059000 Sobic002G059000 Sobic002G267400--Sobic002G059000 Sobic002G267400--Sobic002G357900 Sobic007G192100 Sobic007G192100 Sobic002G267400--Sobic007G192100 Sobic001G036700 Sobic001G036700 Sobic002G267400--Sobic001G036700 Sobic008G111800 Sobic008G111800 Sobic002G267400--Sobic008G111800 Sobic002G267400--Sobic003G062400 Sobic004G256300 Sobic004G256300 Sobic002G267400--Sobic004G256300 Sobic007G081900 Sobic007G081900 Sobic002G267400--Sobic007G081900 Sobic004G337300 Sobic004G337300 Sobic002G357900--Sobic004G337300 Sobic002G357900--Sobic003G148900 Sobic002G357900--Sobic003G222700 Sobic001G061200 Sobic001G061200 Sobic002G357900--Sobic001G061200 Sobic002G357900--Sobic002G267400 Sobic002G357900--Sobic008G140400 Sobic002G357900--Sobic003G062400 Sobic002G357900--Sobic003G038600 Sobic002G029300 Sobic002G029300 Sobic002G357900--Sobic002G029300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.