Gene annotation
Transcriptome id Sobic.009G125000.1
Synonym 1, Sb09g019250, CDKC
Functional annotation cyclin-dependent kinase C-1, putative, expressed
UniProt C5YXH5
Pfam PF00069
Panther DB PTHR24056 PTHR24056:SF187
NCBI CDD -
KEGG Orthology K08819; cyclin-dependent kinase 12/13
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G10270 : cyclin-dependent kinase C;1
RAP-DB (Rice) LOC_Os01g72790.1 : cyclin-dependent kinase, putative, expressed
MaizeGDB (Corn) Zm00025a016901 , Zm00025a007958
Brachypodium KQK11630 , KQK06503
Barley HORVU3Hr1G110150.10 , HORVU3Hr1G110150.11 , HORVU3Hr1G110150.13 , HORVU3Hr1G110150.12 , HORVU1Hr1G056390.1 , HORVU1Hr1G056390.2 , HORVU1Hr1G056380.3 , HORVU1Hr1G056380.2 , HORVU1Hr1G056380.1 , HORVU3Hr1G110150.5 , HORVU3Hr1G110150.4 , HORVU3Hr1G110150.7 , HORVU3Hr1G110150.6 , HORVU3Hr1G110150.1 , HORVU3Hr1G110150.3 , HORVU3Hr1G110150.2 , HORVU3Hr1G110150.9 , HORVU3Hr1G110150.8
Wheat TraesCS1B02G254800 , TraesCS1D02G243300 , TraesCS3B02G561200 , TraesCS3B02G561200 , TraesCS1A02G243300
Populus -


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cDNA sequences
Sobic.009G125000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G059400 expressed protein -
2 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
3 Sobic.001G472100 frigida, putative, expressed -
4 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
5 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
6 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
7 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
8 Sobic.003G062400 PHD finger protein, putative, expressed -
9 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
10 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
11 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
12 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
13 Sobic.006G049100 expressed protein -
14 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
16 Sobic.006G224300 APO, putative, expressed -
17 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
18 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
19 Sobic.003G253400 expressed protein -
20 Sobic.004G145600 expressed protein -


Gene co-expression network
sample Sobic009G125000 Sobic009G125000 Sobic009G059400 Sobic009G059400 Sobic009G125000--Sobic009G059400 Sobic004G345400 Sobic004G345400 Sobic009G125000--Sobic004G345400 Sobic001G472100 Sobic001G472100 Sobic009G125000--Sobic001G472100 Sobic004G180900 Sobic004G180900 Sobic009G125000--Sobic004G180900 Sobic005G040900 Sobic005G040900 Sobic009G125000--Sobic005G040900 Sobic001G042200 Sobic001G042200 Sobic009G125000--Sobic001G042200 Sobic009G040800 Sobic009G040800 Sobic009G125000--Sobic009G040800 Sobic003G062400 Sobic003G062400 Sobic009G125000--Sobic003G062400 Sobic005G198200 Sobic005G198200 Sobic009G125000--Sobic005G198200 Sobic009G017200 Sobic009G017200 Sobic009G059400--Sobic009G017200 Sobic009G059400--Sobic005G198200 Sobic007G218600 Sobic007G218600 Sobic009G059400--Sobic007G218600 Sobic006G144000 Sobic006G144000 Sobic009G059400--Sobic006G144000 Sobic003G393200 Sobic003G393200 Sobic009G059400--Sobic003G393200 Sobic009G059400--Sobic009G125000 Sobic009G059400--Sobic004G345400 Sobic007G148400 Sobic007G148400 Sobic009G059400--Sobic007G148400 Sobic006G224300 Sobic006G224300 Sobic009G059400--Sobic006G224300 Sobic004G345400--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic004G345400--Sobic010G077500 Sobic009G249700 Sobic009G249700 Sobic004G345400--Sobic009G249700 Sobic007G042900 Sobic007G042900 Sobic004G345400--Sobic007G042900 Sobic004G345400--Sobic004G180900 Sobic006G186400 Sobic006G186400 Sobic004G345400--Sobic006G186400 Sobic004G084500 Sobic004G084500 Sobic004G345400--Sobic004G084500 Sobic007G056500 Sobic007G056500 Sobic004G345400--Sobic007G056500 Sobic003G394200 Sobic003G394200 Sobic004G345400--Sobic003G394200 Sobic001G472100--Sobic005G040900 Sobic001G472100--Sobic009G059400 Sobic001G472100--Sobic005G198200 Sobic001G472100--Sobic009G125000 Sobic008G058800 Sobic008G058800 Sobic001G472100--Sobic008G058800 Sobic001G472100--Sobic004G345400 Sobic009G129600 Sobic009G129600 Sobic001G472100--Sobic009G129600 Sobic007G139400 Sobic007G139400 Sobic001G472100--Sobic007G139400 Sobic003G354100 Sobic003G354100 Sobic001G472100--Sobic003G354100 Sobic004G180900--Sobic009G017200 Sobic004G180900--Sobic007G056500 Sobic001G425000 Sobic001G425000 Sobic004G180900--Sobic001G425000 Sobic004G180900--Sobic004G345400 Sobic004G180900--Sobic006G186400 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic005G040900--Sobic009G040800 Sobic006G091000 Sobic006G091000 Sobic005G040900--Sobic006G091000 Sobic004G347100 Sobic004G347100 Sobic005G040900--Sobic004G347100 Sobic005G040900--Sobic007G139400 Sobic010G074900 Sobic010G074900 Sobic005G040900--Sobic010G074900 Sobic003G205501 Sobic003G205501 Sobic005G040900--Sobic003G205501 Sobic005G040900--Sobic004G345400 Sobic005G040900--Sobic001G472100 Sobic005G040900--Sobic009G129600 Sobic001G042200--Sobic010G077500 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic001G042200--Sobic008G058800 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic001G042200--Sobic007G042900 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic009G040800--Sobic006G091000 Sobic009G040800--Sobic005G040900 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic003G253400 Sobic003G253400 Sobic003G062400--Sobic003G253400 Sobic008G160500 Sobic008G160500 Sobic003G062400--Sobic008G160500 Sobic004G145600 Sobic004G145600 Sobic003G062400--Sobic004G145600 Sobic003G038600 Sobic003G038600 Sobic003G062400--Sobic003G038600 Sobic001G005600 Sobic001G005600 Sobic003G062400--Sobic001G005600 Sobic004G068500 Sobic004G068500 Sobic003G062400--Sobic004G068500 Sobic003G062400--Sobic009G125000 Sobic002G267400 Sobic002G267400 Sobic003G062400--Sobic002G267400 Sobic002G357900 Sobic002G357900 Sobic003G062400--Sobic002G357900 Sobic005G198200--Sobic009G059400 Sobic009G113100 Sobic009G113100 Sobic005G198200--Sobic009G113100 Sobic009G137900 Sobic009G137900 Sobic005G198200--Sobic009G137900 Sobic005G072400 Sobic005G072400 Sobic005G198200--Sobic005G072400 Sobic005G198200--Sobic009G017200 Sobic005G198200--Sobic001G472100 Sobic008G111800 Sobic008G111800 Sobic005G198200--Sobic008G111800 Sobic005G198200--Sobic004G180900 Sobic005G198200--Sobic010G077500
Octagon: transcription factors


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